Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0994 ATGGCAGAAATCGAAGTTCCTCAATATTTCTTGTGTCCTATTTCTCTCGAGATCATGAAAGATCCTGTGACAACCGTAACAGGTATAACGTACGACAGAGGCAGCATCGAACAGTGGTTGCTGACGGCAAAGGAGAGGAAATGCCCAGTCACGAAGCAGCAATTGCCACCTGACTCATTCTTGACTCCTAACTCTACCTTACTCAGGCTAATCCAAGCTTGGTCCTCACAAATTGCTCAAAACAGCGCCGTTCAGGTTCCGTCCCCAAAAATTCTCCTTACCTCCTTCTATGTTTACAAGCTCATTTCTGATCTTCAGATTCCTCATCTGTATCAAACCACATTGAGAAAAATCGATTCTTTGGCCAAACACAGCGAAAGCAACAGAAGATGCATGGTGGAATCTGGAGCACTCGACGCCATGGTTTCCATTATTACTCAGAGTTTCATGGAAGGTATAACAAATTGTCTCGAAGAAGCTTTGAGAATTTTTCGTTTACTCTCTGCTGAATCCTCATCCATGGCTCACATGAAGCCTCGGTTTTATGAAAACTTTGACCTTTTTATCACCTCTTTGACCTGGGTTTTGCAAGTTGACGTGAGCAACAACGTTAATATAGTAAACGAAACAATGCCTTTTCTGAAATTGATCGTTGAAACCGCAGATTCAACCCTTCTGGGAAACTTAGAGGTTGAATTTTTCAGAGAATTAACAAAGGTGCTAAAAAACAGAAGAATCTCAGAGAAAGCTATCAAATCAGCCTTGGAAGTTCTCATAGAAACGTGCCCATTAGGAAGAAACAGATCGAAAATCATAGAATCGGGTGCAGTCTCTGAATTAATTGATCTTGAGCTAGAAAAACCAATGAAGAAGATAACGGAGTTAGGGTTCAACCTTCAGGCACATCTATGTTCTTGTGCTGAAGGGAGAGAACAGTTTCTGCAGCACGCAGCGGGAATCGCTGTTATATCTAAGAGGATTCTGAGGGTTTCGAATGCAACAGACGATCGTGCTGTTCATATACTTGCGTTGATAGCTAAGTACTCGTCTTCAAACGATGTCGTTTTGGAGATGTTGAGGGTGGGAGCTGTGTCCAAGATTTGCATGGTGATGCAAGCTGATTGTGCTTCGTATTTGAAGGAGAAAGCAAGAAGTATCCTTAGGTTACACTCCAAAACTTGGAATAATTCTCCATGCATTCAAGTATATTTGCTAACCAGACACCAAAGATGGGGATTAAACTTAAGTGAGTATAAAATCAAATATTACTGTGCTATGTATAGTATACAAATTCAATTTCAGAAAATGAAGGCAGAATATGGTAAACAGAGGAACCTTCGCATCGCCGTCTCGGCAGCTGTGGTGATCACAATCGTCTTGATCGTAGTGATTTTGTCCTTCACGGTGTTCAAACCCAAGTGTACCTTTGACACTGTCGATTCCATCACGATTCAGGGGATGCATGTCGGTCTCGATGTTGCCAAGCTCATCGTCGATCTCAATATCACCCACGGCGTCCAAGTTTCAACCATTAACCCGAATCATGTTTGA 1551 0.421 MAEIEVPQYFLCPISLEIMKDPVTTVTGITYDRGSIEQWLLTAKERKCPVTKQQLPPDSFLTPNSTLLRLIQAWSSQIAQNSAVQVPSPKILLTSFYVYKLISDLQIPHLYQTTLRKIDSLAKHSESNRRCMVESGALDAMVSIITQSFMEGITNCLEEALRIFRLLSAESSSMAHMKPRFYENFDLFITSLTWVLQVDVSNNVNIVNETMPFLKLIVETADSTLLGNLEVEFFRELTKVLKNRRISEKAIKSALEVLIETCPLGRNRSKIIESGAVSELIDLELEKPMKKITELGFNLQAHLCSCAEGREQFLQHAAGIAVISKRILRVSNATDDRAVHILALIAKYSSSNDVVLEMLRVGAVSKICMVMQADCASYLKEKARSILRLHSKTWNNSPCIQVYLLTRHQRWGLNLSEYKIKYYCAMYSIQIQFQKMKAEYGKQRNLRIAVSAAVVITIVLIVVILSFTVFKPKCTFDTVDSITIQGMHVGLDVAKLIVDLNITHGVQVSTINPNHV 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0994 516 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Lele10g0994 516 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lele10g0994 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Lele10g0994 516 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Lele10g0994 516 Gene3D - 95 400 IPR011989 -
Lele10g0994 516 SUPERFAMILY ARM repeat 109 387 IPR016024 -
Lele10g0994 516 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lele10g0994 516 SUPERFAMILY RING/U-box 4 77 - -
Lele10g0994 516 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0994 Lele-ChrLele10 21371574 21374368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0994 3 400 U-box Gene Family AT2G35930 38.557 5.37e-91 282