Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0980 ATGTTCCGCTTATTAGTTTCTGTTGCTTTTCAATCCCTTCACGCTGATGTATTCCAGGTTCCGGGGTTGGAAGAGAATAAGAAGTCTGAAGTGCATTTGACTTCTGCTGCCGCCTTTGTGGAGGGTGGAGTCCAGGATGCTTGTGATGATGCTTGTAGTATATGTCTTGAAGCATTTCATGACAGTGATCCTTCAACAGTGACAAGTTGCAAACATGAGTTTCATCTTCAATGCATTCTAGAATGGTGTCAAAGGAGCTCTCAATGCCCCATGTGTTGGCAACCCATCAGTCTCAAAGATCCAACAAGTCAGGAATTACTTGAGGCAGTGGAAAGAGAGAGAAACATTAGGTTGAATCCACCTAGAAATGCCACAATATTTCATCATCCAGCACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGTGCAAATGATGCTGATCTTGAAGAGCGTATCATACAGCACTTAGCTGCTGCTGCAGCAATGGGACGAGCACGCCATATTGCTAGAAGGGAAGGTCAGAGAAACAGGTCATCAACTCAAGGTCGCCCACATTTTTTGGTATTTTCAACCCATCCTAATTCCCCTCCCATGGCTCCAGCCTCTCCAACTCATGGGGCAAATGGTGAACCAGCTTCAGCAATCACTGTTGCTACTCTATCTTCAACTCCTGCTGCTGGAGAAGAATCATCACAGTTGACTTCTGTTCCTCTTGTTCAAGCAGACCATGTTTCTGCTTCAGGATCAGGATCTTCTGTTCTTGCTGCTGATAACCAAGGATCATCATACAACAGTAGGAGATCTCCGAGCCAGTCTTCTCCAAGCAGTCAGGACAGAGCAGGGCCATCAGAATTCCAATCATTTTCAGAATCTTTGAAGTCTAGACTAAATGCAGTTTCAACGAGATACAAAGAGTCAATATCCAGGAGCACCAGAGGTTGGAAAGAGAGATGGTTCTCTCGCAACAGCTCTACGCCTGATGTGGGATCTGAAGGAAGACAGGAAGTTAATTCAGGGATTGCAACTGTGTCACGCATGATGGAACAACTAGATACCAGAGACAACAATAGAAATGATAGCAACCCTGCTCAACGTCATTTAGAAGATGGTTCGGTTGCTGGACCAAATAACCAACATATTTCAGATGCTGATGGTGAAAGCCCCTTGAGAGATAATAACACAAAAACATCCTTTGCAGCAGCTTTGCTGTGGCTGAAAGGTAGAAATAGGATTGTCAATTGCTGGATATGA 1254 0.445 MFRLLVSVAFQSLHADVFQVPGLEENKKSEVHLTSAAAFVEGGVQDACDDACSICLEAFHDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNIRLNPPRNATIFHHPALGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSTQGRPHFLVFSTHPNSPPMAPASPTHGANGEPASAITVATLSSTPAAGEESSQLTSVPLVQADHVSASGSGSSVLAADNQGSSYNSRRSPSQSSPSSQDRAGPSEFQSFSESLKSRLNAVSTRYKESISRSTRGWKERWFSRNSSTPDVGSEGRQEVNSGIATVSRMMEQLDTRDNNRNDSNPAQRHLEDGSVAGPNNQHISDADGESPLRDNNTKTSFAAALLWLKGRNRIVNCWI 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0980 417 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 33 101 - -
Lele10g0980 417 ProSiteProfiles Zinc finger RING-type profile. 52 92 IPR001841 -
Lele10g0980 417 SUPERFAMILY RING/U-box 45 100 - -
Lele10g0980 417 MobiDBLite consensus disorder prediction 248 290 - -
Lele10g0980 417 SMART ring_2 52 92 IPR001841 -
Lele10g0980 417 Pfam Ring finger domain 51 92 IPR001841 -
Lele10g0980 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 101 IPR013083 -
Lele10g0980 417 MobiDBLite consensus disorder prediction 169 212 - -
Lele10g0980 417 MobiDBLite consensus disorder prediction 353 393 - -
Lele10g0980 417 FunFam E3 ubiquitin-protein ligase RHF2A 23 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0980 Lele-ChrLele10 21103245 21107061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0980 49 100 C3H Transcription Factor Family AT4G00335 44.231 1.70e-11 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0980 10 21103245 21107061 Lele11g1031 11 17489309 17493315 hybridization
Lele10g0980 10 21103245 21107061 Lele12g0295 12 2679876 2683630 hybridization