Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0975 ATGAACTGGAGTAGAGGCAACGTCCTCGGCCATGGCTCGTCGGCCACCGTCTCCCTTGCTGCGTCTCAACAGTGTGGTGAAGCGTTATTTGCCGTCAAGTCATCGGAGCTTTCTTGCTCGGGGTTGTTACAGAGAGAGCAGAGAATTCTCTCTTCTTTGTCTTCTCCTTATATAGTTAGCTATAAAGGATGTGACATCACGAGGGAGAACGACAAGGTGTTCTACAATCTTTTCATGGAGTATATGCCTCTTGGCACGCTCACTCAAGCGACTCGCCGGCGGTACGGCCGACTCGACGAGCCGATGATCGCGTACTATGTTCGGCAAGTTTTGCAGGGGCTGGAGTATCTACATTCAAATGGGTTGGTACATTGTGACATAAAGGGTACCAATATCTTAATTGGAGAAGATGGAGCAAAAATTGCAGACTTTGGGTGCGCTAAGCAGGCGGCTGCAGTGGCGGCGCCGATAAGTGGGACGCCGATATTTATGTCGCCGGAGGTGGCTCGTGGGGAAGAACAGGGGTATCCTTGTGACATATGGGCACTTGGGTGCACTGTGATCGAAGTGGCTTCAGGGGTTTCACCATGGCTTAATGCAGGAGACCCTATTTCGATTCTTTACAAGATAGCATATTCCGGCGAGGTGCCTGAGATTCCGGGTTTTCTATCAGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCAAAAGAGAGATGGACGGTAAGTCAACTCCTGAAGCATCCATTTGTTGGGGAATTGAACTCCAATTCGAAGCAGCAGCAAATCCACGAATCTAATTCAAGTTCTCCAACAAGTATTCTGGAGCAAAGCTTTTGGAGTTCAGTGGAAGAATCATCATCAGAGAGCGTAAGCAATCTACTCAATAATCATACAAGTTTCGAAAATTCGCCAGCTGTTAGAATCAAACGGTTAGCTGTAAGTTCAGGGGATCCCAAATGGATAGAAGACGAGAATTGGATCACAACGATAGGGAACGAAGAAGGATCCGAAGCATCACCCAGCAATAATTCAAAAGAGTCAGAGAAAATCAATGTGATTAGTAGTAGAATTAGGGATTATTTTTGGGATAATTACGAATTTAGGGATGTTAGAATTAAAACAAGTAGTTTCATTTTTGAGAGAGGCATTGATAAAGTGAAACTCTGTAATCCAGTATCAAGTTTTTTATAA 1203 0.4522 MNWSRGNVLGHGSSATVSLAASQQCGEALFAVKSSELSCSGLLQREQRILSSLSSPYIVSYKGCDITRENDKVFYNLFMEYMPLGTLTQATRRRYGRLDEPMIAYYVRQVLQGLEYLHSNGLVHCDIKGTNILIGEDGAKIADFGCAKQAAAVAAPISGTPIFMSPEVARGEEQGYPCDIWALGCTVIEVASGVSPWLNAGDPISILYKIAYSGEVPEIPGFLSEEAKDFLGKCLRRNPKERWTVSQLLKHPFVGELNSNSKQQQIHESNSSSPTSILEQSFWSSVEESSSESVSNLLNNHTSFENSPAVRIKRLAVSSGDPKWIEDENWITTIGNEEGSEASPSNNSKESEKINVISSRIRDYFWDNYEFRDVRIKTSSFIFERGIDKVKLCNPVSSFL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0975 400 FunFam Mitogen-activated protein kinase kinase kinase 17 2 311 - -
Lele10g0975 400 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele10g0975 400 Gene3D Transferase(Phosphotransferase) domain 1 2 319 - -
Lele10g0975 400 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 301 - -
Lele10g0975 400 SUPERFAMILY Protein kinase-like (PK-like) 3 306 IPR011009 -
Lele10g0975 400 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele10g0975 400 CDD STKc_MAPKKK 2 254 - -
Lele10g0975 400 Pfam Protein kinase domain 5 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele10g0975 400 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Lele10g0975 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0975 Lele-ChrLele10 21011054 21012256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0975 2 367 MAP Kinase Kinase Kinase AT5G55090 48.691 8.42e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele10g0975 Pkinase 4.9e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0421 29 2586889 2590350 Lele10g0975 10 21011054 21012256 CCT
Lele30g0988 30 13377953 13381297 Lele10g0975 10 21011054 21012256 CCT
Lele10g0975 10 21011054 21012256 Lele10g0975 10 21011054 21012256 ECH
Lele10g0975 10 21011054 21012256 Lele11g1025 11 17404746 17405936 hybridization
Lele10g0975 10 21011054 21012256 Lele12g0302 12 2776733 2777935 hybridization