Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0953 ATGAGGGTTGTTATAGCCACAAGAACAAACCAGTTTTCCATAGAAGTAGAAAGCCAAGAAAAAGTTGTTAAAATCAAAAGGAAGATAGAACAAATCCTCAGCATCGCAGTGGCTTCACAGATACTTACAGTTTCTGGGTGGGAGCTTGTAGATGGGTTAGACATGGACGATTACCCCATAGTCACAGATGGTACTAAAGTTCACCTCACAACCAAACCAGTTTCTTCTCCACTTTCTTCCCATTTTAATAAAATCCAAATCATAGTGAAGTTTTCAACAAGACAGATCATGATAGAGGTGGATAAAACAGACACAGTTCGTAGTTTGAAGGAAAAGATTCACATTCTTGACAACACACCAATCAAAAGAATGTCACTTTTCTTCTCAGGTGTGGAATTAGGTGAAGATTTCAGAAACTTGACTGAGTAA 429 0.38 MRVVIATRTNQFSIEVESQEKVVKIKRKIEQILSIAVASQILTVSGWELVDGLDMDDYPIVTDGTKVHLTTKPVSSPLSSHFNKIQIIVKFSTRQIMIEVDKTDTVRSLKEKIHILDNTPIKRMSLFFSGVELGEDFRNLTE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0953 142 CDD Ubl_ubiquitin_like 87 133 - -
Lele10g0953 142 Pfam Ubiquitin family 87 142 IPR000626 GO:0005515
Lele10g0953 142 Pfam Ubiquitin family 8 72 IPR000626 GO:0005515
Lele10g0953 142 SUPERFAMILY Ubiquitin-like 78 136 IPR029071 -
Lele10g0953 142 ProSiteProfiles Ubiquitin domain profile. 85 142 IPR000626 GO:0005515
Lele10g0953 142 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 76 - -
Lele10g0953 142 Gene3D - 84 142 - -
Lele10g0953 142 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Lele10g0953 142 Gene3D - 1 73 - -
Lele10g0953 142 SUPERFAMILY Ubiquitin-like 1 77 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0953 Lele-ChrLele10 20742545 20742973 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0953 10 20742545 20742973 Lele10g0953 10 20742545 20742973 ECH
Lele10g0953 10 20742545 20742973 Lele11g1000 11 17024714 17026078 hybridization
Lele10g0953 10 20742545 20742973 Lele12g0322 12 3013323 3014485 hybridization