Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0949 ATGGTGGAACGGAAGCAGTTCAAGACCAGGCTATGTGCACCATATCAGAAAGGCCGCTGTCCACGCCAAAATTGCACCTTTGCTCATGGGAATGCGGAGCTGCGGCGATTCTCTGGCTCATATAGTGATATTGGTAGCTTTTTAGATGTCCTTGGACTATTTCGTAATCCTGTTTCTTTGTCTGTTTGTATAATGGCTTCTGCACATGATTACATATCTATTGGATCATGTGACATGAAGCTTTATAAGGAGAGCATGCTGAGTTTTTCTCCTTTAATGACATGCCCATATGATTGA 297 0.4276 MVERKQFKTRLCAPYQKGRCPRQNCTFAHGNAELRRFSGSYSDIGSFLDVLGLFRNPVSLSVCIMASAHDYISIGSCDMKLYKESMLSFSPLMTCPYD 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0949 98 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Lele10g0949 98 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 7 30 IPR000571 GO:0046872
Lele10g0949 98 Gene3D - 1 36 - -
Lele10g0949 98 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 43 IPR045868 GO:0046872
Lele10g0949 98 SUPERFAMILY CCCH zinc finger 4 36 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0949 Lele-ChrLele10 20698082 20698509 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele10g0949 zf-CCCH 0.0002 CL0537