Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0939 ATGGATATCGACTCACACACCTCCAATTGGCTCTGTGATTATGGCTTTGATGTTTCTGTTGCCGGAGCTGAATTCCCGGTCGTCCCTTCCGGCTGTTTCAACTGGGTGTCTCCTACTTTCAACGGTTCTTGCGATACCAGGTGGGTTTGCAGAAGCATTCTTTTTAGACTTCCTGTTTGGTTTCCAGTCCATGAAGATTGTAAATCCTGGGTTATTAATTCCCAGTCGGTCCAGTCTTTCTCAGAATCCAAACTAGTCTGTGTCTGTGGCATGATCAGTTCATACATTTGTTATAACAAAGCTGCTACTTCTGCTTCTTCCTTACTTCCAACAAGATAATGTCATTTTGCAATTTTTATGCTTAGAATGAAAAGAGCATATCATGGTCCAGCCAAAGCAACATGTGTCCTATTTCATTTGTTATTTATTATGTTGTCCTCATCATTGCTTCATAATTACAGCTTGGACCTGGAATACTCACTGGACAAGTCAACTTCACTGGAAAATGGCCCTTCAAAGCGGTTGAGGACTGAATCATGTGCATCTGGCTCCAAGGCATGCCGTGAGAAACAACGAAGGGATAGACTGAATGAGAGGTTCCTGGAATTGAGTTCTATCTTGGAGCCTGGTAAGCTGCCCAAGACAGATAAGGCTGCTATGTTAAGTGATGCAGTTCGAACGTTAACAGAACTACGAAGAGACGCCCAGAAGCTGAAAGAAACAAATGATGAATTGCTTGAAAAGATCAAGGAACTGAAGACAGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGCTGAAGATGGATAAAGAAAAGCTGGAGCAACAGGTCAAAAGGATGAATGCACAGCCAACCTATCTTTCTCATCCTTCTGCTGCATTTACTGCTCAAGGCCAAACTGCAAGGCACAAGCTGATACCTTTTGTTGGCTATCCTGGAATTGGCATGTGGCAGTTTTTGCCACCTGCTGCTGTTGATACTTCTCAGGATCATCTTCTTCGCCCTCCCGTCGCTTAA 1017 0.4356 MDIDSHTSNWLCDYGFDVSVAGAEFPVVPSGCFNWVSPTFNGSCDTRWVCRSILFRLPVWFPVHEDCKSWVINSQSVQSFSESKLVCVCGMISSYICYNKAATSASSLLPTRXCHFAIFMLRMKRAYHGPAKATCVLFHLLFIMLSSSLLHNYSLDLEYSLDKSTSLENGPSKRLRTESCASGSKACREKQRRDRLNERFLELSSILEPGKLPKTDKAAMLSDAVRTLTELRRDAQKLKETNDELLEKIKELKTEKNELRDEKNRLKMDKEKLEQQVKRMNAQPTYLSHPSAAFTAQGQTARHKLIPFVGYPGIGMWQFLPPAAVDTSQDHLLRPPVA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0939 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 257 IPR036638 GO:0046983
Lele10g0939 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 231 IPR011598 GO:0046983
Lele10g0939 338 Coils Coil 221 283 - -
Lele10g0939 338 PANTHER BHLH TRANSCRIPTION FACTOR 146 338 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lele10g0939 338 Pfam Helix-loop-helix DNA-binding domain 184 231 IPR011598 GO:0046983
Lele10g0939 338 CDD bHLH_AtILR3_like 185 260 - -
Lele10g0939 338 Gene3D - 184 257 IPR036638 GO:0046983
Lele10g0939 338 SMART finulus 186 237 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0939 Lele-ChrLele10 20392580 20395375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0939 152 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 61.856 5.68e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele10g0939 HLH 1.7e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0939 10 20392580 20395375 Lele10g0939 10 20392580 20395375 ECH