Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0904 ATGTACCCAAAACGGTCTAACCAAGGTGATGGACCTGTTTCAAGACCAGTGCGCACTAGTGATAGGATCAAGACAAGGCCGAACATGTATGGTCGACCATACTTGTATTACAGCTCAAAGCACACTAGGAAAAGCAAGAACAAGACAAGGACAGCAGCTTCACAAATTGCCAAGATGTTGCGGCCAAGGGATCGGCCAGCACAAGATTCAAATGCTTCTATTTCTGCAGCTACCAATCTTCGACGCTCAACTAGGAAGAGAAGGATTTCTGTAAATCTTGAAGGTTTCACTGACAGTTCTGGAGCTGAGGATGAAGACTTGATGAGGCCCACATATCAACAACCAAGAAAGCAGATTGACCAAAGTGTGAGTCAGGATGAGTTGAGGCTTCGCAAGCGCAAAAAACCTGTGGAAACTAAACCAAACCCACGGCGTGAAGGTCTGCGGCCTCGTCGTTCAAAGGCTATTGTAAGAGAACCCTTAAATTCAGAATCTGATAATGAGCAGGATTTTTTGGAAGAGAAGGTTGGACAGGATGAGACAGAAGATGGTAATGATTTGGAGGAAAATGATGCAGATGATGGTCAGAATGAGATTGAAGGAGATGCTGAGGGTGAAGATGAAGGTGAGGATGAGGATGAGGATGAAGGAGATGAAGATGGTGATGACGAAGATGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTGCAGATGTTCGCAGATTTTCAATGGAAGAAGGAAAGGCCCAACCAAGGTCACCCCGAAGAGTGTTACATCAAGGTATGGGCACTAAGGTTGGAAGGGATGTCAGGAAGGGTGGATCAAGAGTTCATAAGCGTTATCGTTTAGCAAGACCTGAAGATTCTGATGACTCTATTCTTGTGGATGAGCTGGATCAAGGTCCTGCTATTCCGTGGGGTCGAGGTGGCAGCAGGTCTGGCCCACCTTGGCTTTTTGGTGGACTAGACATGCATGGAACAACAGCATGGGGATTGAATCTTGCTGCATCAGGTTGGGGTCATCAAGGTGATGCTTTAGCTACATTGACATCTGGGATTCAATCTGCTGGACCAAGCTCTAAAGGCGGTGCAGATATTCAACCCTTACAGGTTGATGACAGTGTTAGTTTTGATGACATAGGCGGGCTCTCTGAATATATTGATGCTCTAAAGGAAATGATTTTCTTTCCATTACTGTATCCAGATTTCTTTGCAAGTTATCATATTACTCCACCTAGAGGGGTGTTGTTATGCGGGCCCCCTGGCACAGGCAAAACACTAATTGCAAGGGCTTTAGCCTGTGCTGCATCAAAAGCTGGTCAGAAGGTTAGCTTTTATATGCGCAAAGGAGCAGATGTACTCAGCAAGTGGGTTGGCGAGGCGGAAAGACAATTGAAATTACTCTTTGAGGAAGCACAAAAGAATCAACCTTCTATTATTTTCTTTGATGAAATAGATGGACTTGCTCCTGTGAGGTCTAGCAAGCAAGAACAGATTCACAATTCTATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCCCGTGGACAAGTTGTTTTAATAGGAGCCACCAATAGAATTGATGCTATTGATGGGGCCTTGCGCCGGCCCGGTAGATTTGATCGTGAATTCAACTTTCCCTTGCCTGGCTTAGAGGCACGTGCTGAAATATTGGACATTCATACTCGTAAGTGGAAGCATCCTCCATCAAAGGAATTGAAAAGGGAGCTTGCAGCTAGTTGTGTAGGATATTGTGGTGCTGACCTAAAGGCTCTCTGTACTGAAGCTGCCATTCGTGCTTTTCGTGAAAAATATCCACAGGTTTATATGAGTGATGACAAATTCTTAATAGATGTCGACTCGGTCAACGTAGAGAAGTATCACTTTATTGAAGCAATGTCCACAATAACTCCTGCTGCTCATAGGGGTGCAATTGTACACTCTAGGCCATTGTCTCTAGTTGTTCAACCATGCCTACAAAGACATCTAGAGGAAGCCATGAAAATTATATCTGATATTTTTTCTCCAGTTGCTGTTGCATCAGAATTGTCTAAACTTTCTATGCTTTCCTATGGTTCTGCTATTCCACTTGTCTATCGACCAAGGCTTCTACTTTGTGGTGGTGAAGGCACCGGGCTGGACCATCTTGGGCCTGCAGTTTTACATGAACTGGAAAAATTTCCTGTTCATTCATTAGGACTTCCATCTCTCCTGTCGGATCCTAGTGCTAAGACGCCAGAGGAGGCTTTAGTACATATATTTGGTGAAGCTAGAAGAACAACTCCATCTATTCTCTATTTACCTCAGTTCAATGTTTGGTGGGAAACTGCACATGAACAGCTCAGGGCTGTTCTCCTGACTTTGCTGGAAGAATTGCCTTCTGACATCTCTATTTTATTACTCGGAACATCATCCGTGCCCTTTGATGAAGTCGATGAAGTGCCTCCTTCATTGTTTCCTTCCTGTTCAGTCTATAACATGAAATTACCTTCTACTGAAGATAGAACATCATTTTTCAATTGTTTGATTGATGCTGCTTTATCTGTCTCATTGGAGGGAACGGGCAAAAATTCCCAAGAAACAGATTCCCTTCCTGAACTTCCCAAGGCACCAAAATTAGCTGGTGGTCCGAAGGCATCTGAGATCAGAGCAACAGTTGAAGCTGAGCAGCATGCCCTTCGCAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATATTATATGACAAACGATTTATTGCCTTCCATTATCCGGTATCAGATGAAGATGCACCTAACTACCGCTCAATAATTCAGAACCCAATGGACATGGCTACCATACTGCAGCATGTTGATAATGGCCACTATATTACATGTTCGGCATTCTTACAGGACATTGATCTTATTGTTTCCAATGCTAAGGCTTACAATGGAGAGGACTACAATGGCTCAAGGATTGTCAGTAGAGCTTGTGAGCTCTGTGATGCAGTGCATGGAATGCTCTCACAGATGGATCCAGCGCTGATTGCATACTGTGACAAGATTGCTGCTCAAGGTGGCCCAGTTAATTTGCCTGATGAATTTAGGGGTTCTACATTCCCATCTACGCCTGTTGTTCAGCTGGGAACCACCACTAGAATGAGTGCTAGGCTTCGTAATGTCCAACCTGAGGTTAATATGGATCAAAGCTATGAAGCATTGAGGCGGACAAAAAGGAGCTCCGATGTTACAAATGCAGATGACAAGTCACAACAAGATCCTCTGCTGCTGGAACAGCAAGCCAATGAAGTTGCTTGTGAAGCGCCTGAAGCTGCTTCAGTTGATGAAAATCTACATGGACCTAGTACATGTGGACAAGCAGATGATAGTAGCCTAGATGTCACAATGTCTGATGATGAGTTTTCAAGCCAAGCGGAGTCTGTGAAGCAGCTTTTTGTGAAGCGTAGTGAAAATTACAACATTCCACAGCTTGAAAGGATTTACACAAGAATCATGAAGGGCATTTTTGAAGCCCAAGGCAAAGTAACAAAAAATCTGAAGACTTGGGTGTTGAGGTTTTTGTTTACGTTTGTAGAAGATGATGCAAATTTCTAA 3597 0.4393 MYPKRSNQGDGPVSRPVRTSDRIKTRPNMYGRPYLYYSSKHTRKSKNKTRTAASQIAKMLRPRDRPAQDSNASISAATNLRRSTRKRRISVNLEGFTDSSGAEDEDLMRPTYQQPRKQIDQSVSQDELRLRKRKKPVETKPNPRREGLRPRRSKAIVREPLNSESDNEQDFLEEKVGQDETEDGNDLEENDADDGQNEIEGDAEGEDEGEDEDEDEGDEDGDDEDGEEEQDGRRRYDLRNRADVRRFSMEEGKAQPRSPRRVLHQGMGTKVGRDVRKGGSRVHKRYRLARPEDSDDSILVDELDQGPAIPWGRGGSRSGPPWLFGGLDMHGTTAWGLNLAASGWGHQGDALATLTSGIQSAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMIFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQKNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGLEARAEILDIHTRKWKHPPSKELKRELAASCVGYCGADLKALCTEAAIRAFREKYPQVYMSDDKFLIDVDSVNVEKYHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEEAMKIISDIFSPVAVASELSKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFNVWWETAHEQLRAVLLTLLEELPSDISILLLGTSSVPFDEVDEVPPSLFPSCSVYNMKLPSTEDRTSFFNCLIDAALSVSLEGTGKNSQETDSLPELPKAPKLAGGPKASEIRATVEAEQHALRRLRMCLRDVCNRILYDKRFIAFHYPVSDEDAPNYRSIIQNPMDMATILQHVDNGHYITCSAFLQDIDLIVSNAKAYNGEDYNGSRIVSRACELCDAVHGMLSQMDPALIAYCDKIAAQGGPVNLPDEFRGSTFPSTPVVQLGTTTRMSARLRNVQPEVNMDQSYEALRRTKRSSDVTNADDKSQQDPLLLEQQANEVACEAPEAASVDENLHGPSTCGQADDSSLDVTMSDDEFSSQAESVKQLFVKRSENYNIPQLERIYTRIMKGIFEAQGKVTKNLKTWVLRFLFTFVEDDANF 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0904 1198 SUPERFAMILY Bromodomain 898 1011 IPR036427 GO:0005515
Lele10g0904 1198 Pfam Bromodomain 914 981 IPR001487 GO:0005515
Lele10g0904 1198 MobiDBLite consensus disorder prediction 175 227 - -
Lele10g0904 1198 MobiDBLite consensus disorder prediction 1113 1128 - -
Lele10g0904 1198 CDD Bromo_AAA 900 1010 - -
Lele10g0904 1198 FunFam ATPase family AAA domain-containing protein 892 1020 - -
Lele10g0904 1198 MobiDBLite consensus disorder prediction 122 174 - -
Lele10g0904 1198 CDD AAA 416 555 - -
Lele10g0904 1198 Gene3D - 378 648 IPR027417 -
Lele10g0904 1198 ProSiteProfiles Bromodomain profile. 923 985 IPR001487 GO:0005515
Lele10g0904 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 916 IPR027417 -
Lele10g0904 1198 SMART bromo_6 900 1007 IPR001487 GO:0005515
Lele10g0904 1198 Gene3D - 892 1020 IPR036427 GO:0005515
Lele10g0904 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 645 IPR027417 -
Lele10g0904 1198 Pfam AAA+ lid domain 583 619 IPR041569 -
Lele10g0904 1198 Gene3D - 556 641 - -
Lele10g0904 1198 ProSitePatterns AAA-protein family signature. 525 543 IPR003960 GO:0005524|GO:0016887
Lele10g0904 1198 Gene3D - 671 852 IPR027417 -
Lele10g0904 1198 SMART AAA_5 416 557 IPR003593 -
Lele10g0904 1198 FunFam ATPase family, AAA domain-containing 2 378 561 - -
Lele10g0904 1198 FunFam ATPase family AAA domain-containing protein 2B 556 641 - -
Lele10g0904 1198 MobiDBLite consensus disorder prediction 861 888 - -
Lele10g0904 1198 MobiDBLite consensus disorder prediction 1 239 - -
Lele10g0904 1198 Pfam ATPase family associated with various cellular activities (AAA) 420 555 IPR003959 GO:0005524|GO:0016887
Lele10g0904 1198 PRINTS Bromodomain signature 948 966 IPR001487 GO:0005515
Lele10g0904 1198 PRINTS Bromodomain signature 932 948 IPR001487 GO:0005515
Lele10g0904 1198 PRINTS Bromodomain signature 966 985 IPR001487 GO:0005515
Lele10g0904 1198 PANTHER AAA DOMAIN-CONTAINING 1073 1177 IPR045199 -
Lele10g0904 1198 MobiDBLite consensus disorder prediction 1106 1128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0904 Lele-ChrLele10 15903402 15912300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0904 366 614 Calmodulin-binding Proteins AT3G56690 37.549 2.31e-41 163