Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0886 ATGGGAAGAGGGAAGATAGAAATAAAGAGGATAGAGAACACAACGAATCGGCAAGTGACGTTCTGCAAGAGAAGGAATGGGCTTCTAAAGAAGGCGTATGAGCTGTCTGTGCTATGTGATGCTGAAGTTGCCCTCATCGTCTTCTCCAGCCGTGGCCGCCTCTATGAGTATTCTAACAACAACATAAGGTCAACTATAGAGAGGTACAAGAAAGCTTGTTCAGATAATTCAGGTGCAAGCTCTATTACTGAAATCAATGCTCAGTATTATCAACAAGAATCGGCGAAGCTGCGTCAACAAATTCAGTTGCTTCAAAATTCAAACAGGCACTTGATGGGTGATGCGTTGAGCACACTCACTGTGAAAGAACTGAAGCAGCTGGAAAATAGACTCGAAAGAGGAATCTCTCGAATCAGATCCAAGAAGCATGAGATGCTGCTGGCAGAAATCGAATACCGGCAAAAAAGGGAGATTGAGCTGGAAAATGAAAATCTCTGCCTTCGGACTAAGATAGCTGAAATGGAGAGGGTTGAGCAGCAAGCAAACATGGTGTCAGGAGAGGATCAGCAGCTGAGTGCGATGCAGCAAGCTTTGGCTTCTCGCAATTTCTTCAATCCAGCAACCATCATGGAACATTCTGCAACTCCTTACCCTCACTCTGACAAGAAGATGCTTCATCTTGGGTACTCTCCTTCATTTTCTATTTCATCCTTTCACAGATACTCCCTCTGA 732 0.444 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDNSGASSITEINAQYYQQESAKLRQQIQLLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYRQKREIELENENLCLRTKIAEMERVEQQANMVSGEDQQLSAMQQALASRNFFNPATIMEHSATPYPHSDKKMLHLGYSPSFSISSFHRYSL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0886 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele10g0886 243 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Lele10g0886 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele10g0886 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele10g0886 243 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Lele10g0886 243 Coils Coil 87 107 - -
Lele10g0886 243 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele10g0886 243 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Lele10g0886 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele10g0886 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele10g0886 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele10g0886 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele10g0886 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Lele10g0886 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele10g0886 243 Coils Coil 121 144 - -
Lele10g0886 243 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0886 Lele-ChrLele10 11156707 11168468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0886 1 228 MADS-box Gene Family AT4G09960 72.532 9.62e-115 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele10g0886 K-box 7.3e-26 No_clan