Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0882 ATGATTGCTGATGTTAGAGTGATAGTAGCAACCAACTGTTCTTATATTCTTGACCCTGCCCTTATGCGTTCTGGTAGGCTAGATCGTAAAATTGAGTTTCCACATCGAACTGAAGAAGTGAGGGCTCGAATTCTGCAGCAGTCATCTAGACTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGGCAAATTGGGGATATTGCAAAATCTCATCCTCAAGACTTGATCAGTCTGCTAAAGAAGGTATCTCAATATCTACGCAGTAAAACTTGGGATACAAGAGTTGCAGCTGCCCATGCAATCGGGGCTATTGCTGAGAATGTGAAGCACACAAGCTTAAATGAGCTTATTGCTGCTGTTGCAACAAAAATGTCTGAAGCTGGGATATCTGGTAGTGTTGAAGATATGTGTGCATGGCCTTACTTACAATCTAAAATTACGGGAAGTGCATTTAGGAGCTTTGACCTCAACAAGGTTCTTGAATTTGGTGCATTATTAGCATCTGGAGGACAGGAGTATGATATAGGAAGTGATAACGCAAAAAACCCAAAGGAGCGGTTGGCTCGCCAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTGTGCGAACAATTCATGGATATCAGTGATGTGATAAGAGATGAAGATCTTATAGCATATAAATCAGATTTACGTCCGTATGGAATTGATCATAGAGTTTTTACATCTCATTCTGTACATAACATCCAGAAAATGGTTGCCAATATGGTTCCTAGTGTTAAATCTAAGTGGCCAAGTGCAAGAGAACGGAATCTCTTAAAACGTAAAGCAAAAGTCAACTCAAAAGACCAAACAAAAGGCTGGTGTGAGGATGGAAGCACAGAGGCATCACTTGCTCAAAATGCGACTTCTAAAGGCACATATACTGAGTCAGTAAATTACAATAAGGCTTTTGTTTATGGTAATCATGATGAAGATGGATTTGATCATGATGGAGATGGGCGGTGGCCTTTCCACATTTTTGTTGAGCAGCTTATTATTGATATGTTTGATCCTGTTTGGGAAGTACGCCATGGCAGTGTGATGGCATTGAGGGAGATTTTAACTCATCAAGGTGCATCTGCTGGAGTATTAAAACCGGACTCACGCTTGGGTGGAGAACTATTTCTTGAATTTGAAGATAAAAATGTTTCAAATTTATTAAAGAGAGATAGGGAGATAGATTTGAATATGCAAATTTCAGGGGATGAGCTTGAGTCAAACTCTAAGAGGCCAAAGCTTGAAGATGTATCATCAACTTCCATGGATGGCAGGACCATTTGCAGCAATGGCGGTGATAGCATTGGCACTGAAACTCTTGGTTGCAATTTGCCTATGCATGGCAGGAACGGACAATTTAATGATAGTTCTGTGTGCTTGGATCTAGAATCTTATTCTGAGGGTTTATGTCATTCATGCAAGGAGCCTACTAATATAGCTGAGCATAAGGATTATTCTGGTGAGGATAAGATTGCATCTGGCAATCTTAATGGGCTTCCTCAGAATTGTGAGCTTGTGAACTTGCTTAATGTGATTAAAAGTTCCTGGCTTCAAAACTACGGATTTCTTCAAGATTGTGTAATACGCTTCTTGTGTGTGTTGTCACTAGATCGCTTTGGAGATTATGTCTCTGACCAGGTTGTTGCTCCTGTACGGGAAACCTGTGCGCAAGCATTAGGTGCTGCATTTAAGTACATGCATCCGGCATTAGTAAATGAAACACTAAATATATTGTTGAAAATGCAGTGTAGAGCAGAATGGGAGATTCGTCATGGAAGCCTTTTAGGTATCAAATATTTAGTTGCTGTGCGGCAGGAAATGCTTCCAGAATTGCTTGGACGTGTTCTTCCTGCATGCAAATTTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCGGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGGTTTACAGGGTCAAACTTTGCAGTCAATTATGATGCTATTGTGGGATATTTTGCTTGATTTGGATGACTTAAGCCCATCCACTAGCAGTGTAATGAATCTTCTGGCAGAAATTTATTCTCAGGATGAGATGGTTCCAAAGATGAACAGAGCATATGAATTGGGAGATTCAGAAATGAGTAATCTAATTGGAGTTGGTGACAGCGGTGGTAATGATCATGACAAAAATCCTTATATGCTATCGATGTTGGCACCACGCTTGTGGCCTTTTATGAGGCATAGCATCACCTCTGTTCGGTTTTCAGCTATTCGCACTTTGGAGAGGCTGCTTGAAGCTGGATACAAGAGAAGCATGTCTGAGCTATGCAGTTCTTCATTTTGGCCTTCTTTTATCGTAGGAGATACCCTTCGTACTGTATTTCAGAATCTGCTGTTGGAATCAAATGAGGCTATATTGCAGTGTTCTGAGAGAGTTTGGAGGCTTCTTGTTCAGGGTCCAGTTGAAGATTTGCAGACGGCTGCAATATCTTATATGAATTCGTGGATAGAACTTGCGTCTACCCCATTTGGTTCAGCATTAGATACCTCAAAAATGTTTTGGCCTGTTACCTTTCCACAAAAAAGTCAATTGAGAGCAGCGGCTAAAATGAGAGCTGTGAAGGTTGAAAATGAATATGGTGGGGATCTTGGCTTGGATTCTACTAAAGGAATTAATCTACAAGAAAGAAATGGAGATGTTTCCATGGGTTCTGTCAAGATTGTTGTTGGTGCTGACATTGATACATCAGTAACTAATACTAGAGTGATAACTGCTACTGCATTAGGAATTTTTGCTTCTAAGCTGCCAGAGGTTTCTATTAAAGATGTGATTGATCCGCTGTGGAACGCTCTTACCTCTTTGTCTGGTGTCCAGCGCCAGGTTGCGTCCATGGTATTTATTTCTTGGTTCAAGGAGATTAAAAGAAGTCAATTATCTGAAAACCTTAAGATTATTCCTGGTGTCCCAAATTATCTCAAAGACTGGCTGCTGGACTTATTGGCATGTTCTGATCCAGCATTCCCGACAAAGGATTCATTTCTTCCTTATGCTGAGCTTTCAAGAACATATTCAAAGATGCGTAGTGAGGCTGGTCAATTGCTTAATGTTATGAAATGTTCTGGTATGTTTGATGACTTATTGTCAGCTATGAAAGTTGAGTTGGAGAGCTTTAGTGTGGATGATGCCATTAATTTTGCATCAAAAGTTCCGGCTTTGTCTAATGAAATTGTTGGGAATGAGTCTTTGGGAAGAAACATTATGGATGATATTGAGTCATCAAAACAGAGACTCTTGACAACTTCTGGCTATTTAAAATGTGTTCAGAGCAATTTGCATGTTACGGTCTCATCTGCAGTTGCGGCTGCAGTTGTCTGGATGTCAGAATTTCCTTCACGCCTCACCCCAATTATTTTGCCTTTGATGGCTTCAATAAAACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAGGCACTGGCTGAGCTTATGTATCACTCTGTTGAACGTAGACCTTGCCCAAATGATAAATTAATTAAGAATATTTGTGGCTTGACTTGTATGGATCCCTCTGAGACACCTCAAGCTGAATTTATTAGATCCATCGATAGTATTGATGACCAAGGTCTCATGTCCTTTGGAACTCCGGGGGTTAAACAGAGATCAAAGGCCCACGTGCTGGTTGGTGAAGATCGATCAAAGCTCGAGGGCTTTATCAGTAGACGTGGATCTGAACTCTCACTGAGGTTTCTATGTGAGAAGTTTGGTGTTTCATTGTTCAATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAGGTGCTTAAGCCTAGCTCTGCTGAATCTCTTGCTGCTTCTGAAAAAGAAGTCATGTTGGTTATTGAGTCTGTCAGCAATCCCCAGACCTTGATTAACAATATTCAGGTGGTACGCACTATTTCTCCCTTCCTGCATGAGGATTTGAAGCCAAAACTGTTGACACTTCTCCCTTGCATTTTCAAATGTGTTAAGCATACTCATGTTGCTGTTAGATTAGCTGCTTCACGTTGCATTACTTCAATGGCCAGGTCAATGACTTTAAAAGTTATGGGAGCTGTGGTTGAAAATGCTGTCCCTATGTTGGCAGATGCTTCATCAGTTCATGCTCGGCAAGGAGCTGGCATGCTGATTAGTTTTCTTGTTCAGGGGCTCGGTGTGGAGCTGGTCCCTTATGCTCCTCTCTTGGTAGTTCCACTTCTTCGGTGTATGAGTGATTGTGATCAGTCCGTTAGACAGAGTGTTACGCATAGTTTTGCCACTCTTGTACCTTTACTTCCTTTAGCACGGGGCCTTCCTCCACCTCTTGGTTTAGGGGAGGGTTTATCCAGAAACACAGAAGATGTAAAATTTTTGGAGCAACTACTTGACAATTCTCATATTGAAGATTATCAGTTGTGCACTGAGTTGAAAGTAACATTGAGAAGGTATCAGCAGGAAGGTATAAATTGGTTGGCGTTCTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAAACTCTTCAAGCATCAGCAATTGTGGCATCTGAAATATCTGAGCATCAAAGTCTGAATGGGAATGAGGAACTTCTGCCATCTTTAATCATTTGCCCATCGACACTGGTTGCACATTGGGCATTTGAGATAGAGAAATATATTGATGTTTCTATTATATCTACTCTTCAATATGTTGGTTCTGCTCAGGAGCGGATGTGTGTTAGAGATAATTTCTGTAAGCATAATGCCATCATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTAGGTCAGCTGCAATGGAATTACTGCATTTTAGATGAAGGACATATAATCAAGAATGCTAAGTCCAAAGTAACTCTCGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGTACACCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCAGGATTTCTTGGTACGGAGAGACAGTTCCATGCCACTTATGGAAAACCACTCCTAGCTGCAAGAGATCCCAAGTGCTCTGCTAGGGATGCTGAAGCAGGAGTTCTTGCTATGGAGTCATTGCATAAGCAGGTCATGCCTTTCCTTCTCCGTAGAACAAAGGAAGAAGTCTTGTCTGATCTGCCAGAAAAAATAATTCAAGACAGATACTGTGATTTAGGTCCTGTACAACTTAAACTCTATGAACAGTTTTCTGGTTCTCCTGTCAAACAAGAAATCTCATCTATAGTAGCAGTGAATGAATCAGCTGCGACAGAAGGAAGCAGCAGATCACCGAAAACATCTTCACATGTTTTCCAGGCACTTCAATACTTGCTAAAGTTGTGCAGTCATCCTTTGCTTGTCGTTGGTGAGAAGATTCCTGATCAACTCTCTACCATTCTCTCAGAATTGTTGCCTGCTGGCTCTGAAATCATTTCAGAACTTCACAAACTACATCACTCCCCAAAATTGGTGGCTCTCCAGGAGATATTGGAAGAATGTGGAATAGGAGTTGATTCTTCAGGTTCTGAGAGTGCTCTTAGCATTGGGCAGCACAGGGTCTTGATATTTGCTCAACATAAGGCTTTTCTGGATATTATTGAGAAAGATTTATTCCAGACATATATGAAGAATGTCACATATTTGCGATTGGATGGATCTGTTGAGCCGGAGAAGCGTTTTGGAATTGTCAAAACATTCAATTCAGACCCTACCATTGATGTATTGTTGCTTACAACGCATGTGGGTGGGCTTGGATTGAACCTGACATCCGCAGATACGCTTGTTTTTGTGGAGCATGATTGGAATCCAATGCGAGATCATCAGGCTATGGACAGAGCACACCGTTTAGGTCAGAAAAAAGTTGTCAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAAGTCATGAGTCTACAAAGGTTCAAAGTTTCAGTGGCTAATGCTGTCATTAATGCTGAAAATGCCAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTGTTCACACCGGCAGAAAGCTCGAAGAAGGGAGCTTCTGCTGCGAACCGATCAAATGACACAGATGGAGATACTAAATCCGCGGGCAGTGGGAAGGGGTTGAAAGCAGTACTCGGAGGTTTGGAAGAGCTTTGGGACCATTCACAATATACAGAAGAGTACGATCTGACTCAATTTTTGTCAAAGCTTAATGGCTGA 6270 0.4144 MIADVRVIVATNCSYILDPALMRSGRLDRKIEFPHRTEEVRARILQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLISLLKKVSQYLRSKTWDTRVAAAHAIGAIAENVKHTSLNELIAAVATKMSEAGISGSVEDMCAWPYLQSKITGSAFRSFDLNKVLEFGALLASGGQEYDIGSDNAKNPKERLARQKQNLRRRLGLDVCEQFMDISDVIRDEDLIAYKSDLRPYGIDHRVFTSHSVHNIQKMVANMVPSVKSKWPSARERNLLKRKAKVNSKDQTKGWCEDGSTEASLAQNATSKGTYTESVNYNKAFVYGNHDEDGFDHDGDGRWPFHIFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVLKPDSRLGGELFLEFEDKNVSNLLKRDREIDLNMQISGDELESNSKRPKLEDVSSTSMDGRTICSNGGDSIGTETLGCNLPMHGRNGQFNDSSVCLDLESYSEGLCHSCKEPTNIAEHKDYSGEDKIASGNLNGLPQNCELVNLLNVIKSSWLQNYGFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRAEWEIRHGSLLGIKYLVAVRQEMLPELLGRVLPACKFGLEDPDDDVRAVAADALIPAAAAIVGLQGQTLQSIMMLLWDILLDLDDLSPSTSSVMNLLAEIYSQDEMVPKMNRAYELGDSEMSNLIGVGDSGGNDHDKNPYMLSMLAPRLWPFMRHSITSVRFSAIRTLERLLEAGYKRSMSELCSSSFWPSFIVGDTLRTVFQNLLLESNEAILQCSERVWRLLVQGPVEDLQTAAISYMNSWIELASTPFGSALDTSKMFWPVTFPQKSQLRAAAKMRAVKVENEYGGDLGLDSTKGINLQERNGDVSMGSVKIVVGADIDTSVTNTRVITATALGIFASKLPEVSIKDVIDPLWNALTSLSGVQRQVASMVFISWFKEIKRSQLSENLKIIPGVPNYLKDWLLDLLACSDPAFPTKDSFLPYAELSRTYSKMRSEAGQLLNVMKCSGMFDDLLSAMKVELESFSVDDAINFASKVPALSNEIVGNESLGRNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVSSAVAAAVVWMSEFPSRLTPIILPLMASIKREQEEILQMKSAEALAELMYHSVERRPCPNDKLIKNICGLTCMDPSETPQAEFIRSIDSIDDQGLMSFGTPGVKQRSKAHVLVGEDRSKLEGFISRRGSELSLRFLCEKFGVSLFNKLPKLWDCLTEVLKPSSAESLAASEKEVMLVIESVSNPQTLINNIQVVRTISPFLHEDLKPKLLTLLPCIFKCVKHTHVAVRLAASRCITSMARSMTLKVMGAVVENAVPMLADASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFATLVPLLPLARGLPPPLGLGEGLSRNTEDVKFLEQLLDNSHIEDYQLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEISEHQSLNGNEELLPSLIICPSTLVAHWAFEIEKYIDVSIISTLQYVGSAQERMCVRDNFCKHNAIITSYDVVRKDIDYLGQLQWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFHATYGKPLLAARDPKCSARDAEAGVLAMESLHKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLGPVQLKLYEQFSGSPVKQEISSIVAVNESAATEGSSRSPKTSSHVFQALQYLLKLCSHPLLVVGEKIPDQLSTILSELLPAGSEIISELHKLHHSPKLVALQEILEECGIGVDSSGSESALSIGQHRVLIFAQHKAFLDIIEKDLFQTYMKNVTYLRLDGSVEPEKRFGIVKTFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFTPAESSKKGASAANRSNDTDGDTKSAGSGKGLKAVLGGLEELWDHSQYTEEYDLTQFLSKLNG 2089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0882 2089 CDD DEXHc_Mot1 1494 1726 IPR044078 GO:0005524
Lele10g0882 2089 Gene3D - 36 60 - -
Lele10g0882 2089 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 47 2088 IPR044972 GO:0003677|GO:0016887|GO:0017025
Lele10g0882 2089 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1863 2018 IPR001650 -
Lele10g0882 2089 CDD SF2_C_SNF 1841 1983 - -
Lele10g0882 2089 FunFam TATA-binding protein-associated factor BTAF1 1242 1452 - -
Lele10g0882 2089 Gene3D - 1465 1725 IPR038718 -
Lele10g0882 2089 MobiDBLite consensus disorder prediction 2033 2056 - -
Lele10g0882 2089 SUPERFAMILY ARM repeat 49 1532 IPR016024 -
Lele10g0882 2089 Gene3D - 4 35 IPR027417 -
Lele10g0882 2089 Gene3D - 920 1450 IPR011989 -
Lele10g0882 2089 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1464 1725 - -
Lele10g0882 2089 ProSitePatterns AAA-protein family signature. 5 23 IPR003960 GO:0005524|GO:0016887
Lele10g0882 2089 FunFam TATA-binding protein-associated factor BTAF1 44 139 - -
Lele10g0882 2089 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1506 1676 IPR014001 -
Lele10g0882 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 55 IPR027417 -
Lele10g0882 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1727 2028 IPR027417 -
Lele10g0882 2089 FunFam TATA-binding protein-associated factor 172 1736 2054 - -
Lele10g0882 2089 MobiDBLite consensus disorder prediction 420 439 - -
Lele10g0882 2089 Pfam Helicase conserved C-terminal domain 1871 1972 IPR001650 -
Lele10g0882 2089 Gene3D - 545 784 IPR011989 -
Lele10g0882 2089 Gene3D - 1736 2053 IPR027417 -
Lele10g0882 2089 Pfam Domain of unknown function (DUF3535) 821 1278 IPR022707 -
Lele10g0882 2089 SMART ultradead3 1490 1687 IPR014001 -
Lele10g0882 2089 SMART helicmild6 1886 1972 IPR001650 -
Lele10g0882 2089 Pfam SNF2-related domain 1512 1808 IPR000330 GO:0005524|GO:0140658
Lele10g0882 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1472 1726 IPR027417 -
Lele10g0882 2089 MobiDBLite consensus disorder prediction 2033 2050 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0882 Lele-ChrLele10 11006016 11041800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0882 1466 2026 RAD5 or RAD16-like Gene Family AT1G02670 26.841 2.39e-42 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele10g0882 DUF3535 2e-100 No_clan