Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0801 ATGGCCTCCCCAACCCTCATTACCCCAACTTCCACCCCAAAATCACTCCCCCCTACTAAGCCCAAATCCCCCATTGTCGCCGCCACCGCCTCCTCCTCCATCACGACAGCCACCCAGCCCCGCCGCCGTGAATTCCTCTCCATCGCCTCCTCCGTCACTTCCATCTTATGCCTCAACCTCAACCCGCTGCTGCCAGCACTAGCTGATTCAGACGAAGAATATGTGAAGGAAACAGAGGAAGTGATCAATAAGGTGAGAACCACCATTACAATGGACAAGAAGGATCCCAATGTTGCAGATGCGGTGACTGAGTTGAGAGAGACGTCGAATTCCTGGGTGGCTAAGTACCGGAGAGAGAAGGCTCTGTTGGGAAGGGCTTCGTTTCGTGATATGTACTCAGCACTGAATGCAGTTTCAGGGCATTATATTAGTTTTGGACCCACTGCTCCAATTCCTGCAAAACGCAGGGCCAGGATCTTGGAGGAGGTCGACACTGCTGAGAAGGCTCTGAAAAGAGGAAGGTGA 525 0.5295 MASPTLITPTSTPKSLPPTKPKSPIVAATASSSITTATQPRRREFLSIASSVTSILCLNLNPLLPALADSDEEYVKETEEVINKVRTTITMDKKDPNVADAVTELRETSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRARILEEVDTAEKALKRGR 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0801 174 Gene3D Photosystem II Pbs27 69 174 IPR038450 -
Lele10g0801 174 Hamap Photosystem II lipoprotein Psb27 [psb27]. 50 170 IPR025585 GO:0009523|GO:0010206|GO:0010207
Lele10g0801 174 PANTHER PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC 71 170 IPR025585 GO:0009523|GO:0010206|GO:0010207
Lele10g0801 174 FunFam Photosystem II lipoprotein Psb27 69 174 - -
Lele10g0801 174 Pfam Photosystem II Pbs27 31 170 IPR025585 GO:0009523|GO:0010206|GO:0010207
Lele10g0801 174 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0801 Lele-ChrLele10 6410236 6410760 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0801 10 6410236 6410760 Lele29g0531 29 3228743 3232293 CCT
Lele10g0801 10 6410236 6410760 Lele30g0880 30 12713931 12716482 CCT
Lele10g0801 10 6410236 6410760 Lele31g1015 31 17177385 17180375 CCT
Lele10g0801 10 6410236 6410760 Lele32g0508 32 3190214 3192772 CCT
Lele10g0801 10 6410236 6410760 Lele10g0801 10 6410236 6410760 ECH
Lele10g0801 10 6410236 6410760 Lele11g0880 11 8859413 8859931 hybridization
Lele10g0801 10 6410236 6410760 Lele12g0463 12 12546963 12547487 hybridization