Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0788 ATGGCCTTAGATTTGCAGTTAGAGGATTCTGCAGCACAATCTGATGCTTCTGGAGATAAATCGTGCTTGGAAAAGTGGAATTCTGCTCCTGGAGCCGTTGCAGATTGTAATAGGGAAGCTTCTGGTGACTTTGAATGCAATATCTGCTTGGATTCCTTGCATGATCCAGTATTAACTCTTTGTGGTCATCTCTTTTGCTGGCCCTGCATTTACAAATGGCTCTATTTTAGTAATGTTTCTTCTCAAAAATGCCCAGTATGCAAATCAGAAATCTCTCAATCCTCCCTGGTTCCGGTGTATGGACGGATCCAAATCACAACACCTTTCAAAGGCAAGAACTCTCACAATGTAGGTTCCGCCATACCTCCAAGACCTCGCGGTGGTCCCGTGTCAGTTCATGACTTACCAAGATCATATAACAGTGTAGCCGCAGATCATGACTCGCAAAGATCGTATGATACCAGAACTGCTTCCCAACCAGCTACTCAATTTCACCAACACCATTATCCTTATCAGACTCAACAGTTCAATGCATTTGACACAACGCATGGAGTTTTTGGTCAGATGATATATGCGAGAGTGTTCGGTAATCAGTTGACAAACATGTACGCTTCTGATTCGTATGGTCTCGAAGTGAACAACAACAACAACCCGAGGGTGAGAAGGCATTTGATTCAAGTAGATAAATCACTCAGCAGAATCTGCTTATTCCTCTTCTGCTGCACAGTTCTGTGTCTTCTCTTATTCTGA 750 0.432 MALDLQLEDSAAQSDASGDKSCLEKWNSAPGAVADCNREASGDFECNICLDSLHDPVLTLCGHLFCWPCIYKWLYFSNVSSQKCPVCKSEISQSSLVPVYGRIQITTPFKGKNSHNVGSAIPPRPRGGPVSVHDLPRSYNSVAADHDSQRSYDTRTASQPATQFHQHHYPYQTQQFNAFDTTHGVFGQMIYARVFGNQLTNMYASDSYGLEVNNNNNPRVRRHLIQVDKSLSRICLFLFCCTVLCLLLF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0788 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 105 IPR013083 -
Lele10g0788 249 ProSiteProfiles Zinc finger RING-type profile. 46 88 IPR001841 -
Lele10g0788 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 246 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele10g0788 249 SMART ring_2 46 87 IPR001841 -
Lele10g0788 249 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Lele10g0788 249 CDD RING-HC_AtRMA_like 44 89 - -
Lele10g0788 249 SUPERFAMILY RING/U-box 41 105 - -
Lele10g0788 249 Pfam Zinc finger, C3HC4 type (RING finger) 44 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0788 Lele-ChrLele10 6258608 6259357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0788 39 249 C3H Transcription Factor Family AT4G28270 39.013 5.11e-46 150
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1017 31 17192777 17201688 Lele10g0788 10 6258608 6259357 CCT
Lele32g0506 32 3164003 3171520 Lele10g0788 10 6258608 6259357 CCT
Lele29g0530 29 3222159 3223013 Lele10g0788 10 6258608 6259357 CCT
Lele10g0788 10 6258608 6259357 Lele10g0788 10 6258608 6259357 ECH
Lele10g0788 10 6258608 6259357 Lele11g0867 11 8697295 8697999 hybridization
Lele10g0788 10 6258608 6259357 Lele12g0475 12 12721620 12723573 hybridization