Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0777 ATGGATCATCATCAGCAACGAATTCAAGCTCCTTCTTCGCACACCAAGATCGAAAGAAGGCTCATCGAGAAAAACCGAAGAAACCAGATGAAGATCCTCTACTCCACACTCAATTCTCTTCTACCAAACTTCAACCCTAAGAAAATGATTCCACTGCCTGATCAGATAGACGAGGCCATAAACTATATAAAGAGTTTAGAGGCAAAGGTGAAGATGGCTCAGGAGAAGAAAGAGATGTTAATGGGAAACAAAAGGTCACATGCTAGCTGCAGCTCTACTTCTTTTGAGATACAGAGAAGCCTGATGAATAATTCCCCACAAATTCAGATTCATGAAATGGGTTCGTCGCTACAAGTAATTCTGATTAATGGTTTGGATAATCAGTTCATTTTCTATGAGATTATTCGCATACTGCACGAAGAAAACGTGGAGGTCATAAGTGCCAATTCCTCACTTACCGGAGATTCAATGCTAAACGTTGTGCACGCACAGATTCAGCCATCTTTGTATGATTTTGGAGGTGCCAAAGTAAGTGAGAGATTGAAAAGGTTTGTGTATGGATCATCTGCCAGTGATGTAGAAATACAGCCAACGGAGTTGCAAGATTATTTCGAAATTGGTACGGATACAGGGTTCTTCTAA 642 0.4065 MDHHQQRIQAPSSHTKIERRLIEKNRRNQMKILYSTLNSLLPNFNPKKMIPLPDQIDEAINYIKSLEAKVKMAQEKKEMLMGNKRSHASCSSTSFEIQRSLMNNSPQIQIHEMGSSLQVILINGLDNQFIFYEIIRILHEENVEVISANSSLTGDSMLNVVHAQIQPSLYDFGGAKVSERLKRFVYGSSASDVEIQPTELQDYFEIGTDTGFF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0777 213 SMART finulus 20 72 IPR011598 GO:0046983
Lele10g0777 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 87 IPR036638 GO:0046983
Lele10g0777 213 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 186 IPR015660 -
Lele10g0777 213 Pfam Helix-loop-helix DNA-binding domain 18 67 IPR011598 GO:0046983
Lele10g0777 213 Gene3D - 4 94 IPR036638 GO:0046983
Lele10g0777 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 66 IPR011598 GO:0046983
Lele10g0777 213 Coils Coil 56 83 - -
Lele10g0777 213 FunFam Transcription factor bHLH162 7 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0777 Lele-ChrLele10 6119054 6119932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0777 17 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.714 8.20e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele10g0777 HLH 1.6e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0777 10 6119054 6119932 Lele12g0488 12 12926818 12927691 hybridization