Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0772 ATGCAAGAGACTCAACGGTTCTCCTCTTCCATGTCACTGCACGCTTTCAAGGAAACTCTCAAGCCTTGCTCAAGCCAACCGTCTTCTTCTACATCGGTTAGCCGAACGCAGTTTTCGCTTTTCCGAGATTCCCACCTCCCAATCCCTAGGAAACCCCCAAAGTCCTCTCTCGCCCAGCAGCTTCGTCGCCTGCAAGACCCACTTGCTCCTCCGCTAATTCAGCCTCACAATTCACCTAAGCGAGCAAGGGAACAGAAAAGTAGTGACGTCGTCGATGAGGAAGAAGAGGAGGAGGAGGAGGAGCCAGAATTGAAGAGAGCGAAATTTGGTGGCGCTAAGTTGTGTCAGTTTCAGTTCGATCATACTGGACCCTTTGAGCCTCTGATCTTGTCTTCGGATGGAGAAGTTCCAGTGGTTCAGGTTCCTGCATCTATCAACTGCAGACTGCTTGAACATCAAAGATCAGGAGTGAAGTTTCTGTATAGTTTGTATAAAAACAATCATGGAGGCATTCTTGGCGATGACATGGGCCTTGGGAAGACCATTCAAACAATAGCATTTCTTGCTGCTGTGTTCGGTAAAGATGGAGAATATATGCCAAAGGAAAACCAAGCAATGAAAAGAGATCCTGTATTAATAATTTGCCCAACTTCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAATGGGCAAACTTTAGTGTTTCCATTTATCACGGTTCAAACCGAGATCTAATATATGATAAATTGGAAGCACATGGAGTGGATATACTTGTTACCAGTTTTGACACATACAGAATTCATGGTAGCATCTTGTCAGAAATGAAATGGGACATTGTGGTTGTTGATGAGGCTCATCGGCTCAAGAATGAGAAATCCAAACTCTACAAAGCATGTTTAGAAATAAAAACACAAAAACGTTTTGGTCTTACTGGCACGATCATGCAAAATAAGATCATGGAACTGTTTAATCTCTTTGACTGGGTTGTTCCAGGATCCCTGGGAACACGGGAACACTTTCGAGATTTCTATGATGAACCCCTGAAGCATGGTCAGAGGTCAACTGCTCCAAAGAGGTTTGTTGAAATTGCCAACAAGCGAAAACAGCAACTTGTGACCGTTCTTCAGAAATATATGTTAAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGAAAGGAAGATAATGTTGTGTTCTGTGCCATGAGTGAATTACAAAAACGGGCATATAGGAGAATGTTACAACTTCCTGATATCCAATGCCTTATTAATAAGGATTTGCCTTGTAGTTGTGGAAGCCCACTAACTCAAGTTGAATGTTGCAAGAGGATTGTATCAAATGGAATCATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCTTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATCAAGCCAAACCCCAAAGATGACCCGGACAAACGAAGAAAAGACGCCGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGGTTTGGTGGGTGGGAACACGCAGAATGAGAATTTTATGGGTCTAAGTGATGTGAAACATAGTGGCAAAATGAGAGCACTTGAAAAACTTTTGTTTTCATGGATCTCTCAGGGTGATAAAATTCTTTTGTTTAGCTATTCTGTAAGAATGCTTGACATACTGGAGAAATTTCTTATAAGAAAAGGCTACTGCTCCTCAAGACTTGATGGATCCACTCCAACTAATTCACGTCAGTCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCTTGATATCAACTCGAGCTGGCGGGCTTGGATTGAACCTTGTCAGTGCAAATCGTGTGGTGATATTTGATCCCAACTGGAATCCCTCTCAAGATTTACAGGCACAGGACCGGTCATTCCGATTTGGGCAGAAGCGACATGTTGTGGTATTCCGGCTTCTTGCAGCCGGTTCACTTGAAGAGCTTGTTTATTCTCGTCAGATCTATAAGCAGCAACTATCAAACATTGCTGTCTCTGGAAAAATGGAAAAGCGTTATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAACTTTTTGGGATATGCAATTTATTTCGAGATTTATCTGACAAGCTTTTTACAAGTGAAATAATTCATGTGCATGATAAGGAAGGAAAAGAACATGGGCATAGAATAGACCGGGGAGAAAAACTTGTTCCTTCAGAAGAAGCTGACATCTTAGTATCAGAGTCTGGGAACCGGTTATCAACCAATTATAAGAGGACTTCAACGAGGGAAGCAGATCTGGAAGATCTTGGCATTGTCTATGCACATCGGAATGAAGACATAGTCAACTTTGGTCCCTTAATTCAAGGGAAGACAGAGACCAACGTCTATCACAGTGAAAGCCAAAGCATGCATGTTGTCCAGAGAGAAGAACTAGATTGTGTAGTTGAAAAACGGAAAGCTCCTATCATAAATGAGAGGAAGAGAGCCCAATATAGGCTGCTCGCTCAGTCTAGAGGCATGGGAGAGCTTGAATTTAGCATGTGGTTATTATCAGCGACTCCAAGGGAAAGAGAGGAAGTGCTTCAAGACTACAGGAGGAAGAAGATACCTTAA 2649 0.4281 MQETQRFSSSMSLHAFKETLKPCSSQPSSSTSVSRTQFSLFRDSHLPIPRKPPKSSLAQQLRRLQDPLAPPLIQPHNSPKRAREQKSSDVVDEEEEEEEEEPELKRAKFGGAKLCQFQFDHTGPFEPLILSSDGEVPVVQVPASINCRLLEHQRSGVKFLYSLYKNNHGGILGDDMGLGKTIQTIAFLAAVFGKDGEYMPKENQAMKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGSNRDLIYDKLEAHGVDILVTSFDTYRIHGSILSEMKWDIVVVDEAHRLKNEKSKLYKACLEIKTQKRFGLTGTIMQNKIMELFNLFDWVVPGSLGTREHFRDFYDEPLKHGQRSTAPKRFVEIANKRKQQLVTVLQKYMLRRTKEETIGHLMMGKEDNVVFCAMSELQKRAYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVSNGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKRRKDAEFAAAVFGPDIGLVGGNTQNENFMGLSDVKHSGKMRALEKLLFSWISQGDKILLFSYSVRMLDILEKFLIRKGYCSSRLDGSTPTNSRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIHVHDKEGKEHGHRIDRGEKLVPSEEADILVSESGNRLSTNYKRTSTREADLEDLGIVYAHRNEDIVNFGPLIQGKTETNVYHSESQSMHVVQREELDCVVEKRKAPIINERKRAQYRLLAQSRGMGELEFSMWLLSATPREREEVLQDYRRKKIP 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0772 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 705 IPR027417 -
Lele10g0772 882 Pfam SNF2-related domain 165 422 IPR000330 GO:0005524|GO:0140658
Lele10g0772 882 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 332 IPR014001 -
Lele10g0772 882 SMART helicmild6 567 650 IPR001650 -
Lele10g0772 882 SMART ultradead3 145 340 IPR014001 -
Lele10g0772 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 382 IPR027417 -
Lele10g0772 882 Gene3D - 128 381 IPR038718 -
Lele10g0772 882 CDD SF2_C_SNF 532 661 - -
Lele10g0772 882 PANTHER SNF2/RAD54 FAMILY MEMBER 25 821 - -
Lele10g0772 882 MobiDBLite consensus disorder prediction 42 105 - -
Lele10g0772 882 FunFam Switch 2 131 381 - -
Lele10g0772 882 Pfam Helicase conserved C-terminal domain 538 650 IPR001650 -
Lele10g0772 882 Gene3D - 394 726 IPR027417 -
Lele10g0772 882 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 541 694 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0772 Lele-ChrLele10 6012917 6020535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0772 553 680 RAD5 or RAD16-like Gene Family AT1G11100 36.719 8.87e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele10g0772 SNF2_N 1.2e-56 CL0023