Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0770 ATGTTATGCTTAGGATTTGATATGGTTGACCCTGAAAAATTGAACTTTTGTTTGTTTAAGAGGAAGGGACTAGGGTTTTTATTCCAGATTGTGTATGTGGGGTGGGTTGTTCTACTGTTACTTCGACCTGTGGCGGGTCTGAGACCATTAAGAGAAAGAACTCGGTCATGGAGCGATGAGTGGCTATTTTCAACAAAAGATGAAAGTGATCAATTTTCACAATGGAACATAACAGGAACTTACAAAGGGACATGGAATTTTTTAGATACTGCAAATGGCTCTTCAAGATTTTCAGACATGAGAAAAACAAATGGCAATTCTGTAATTGAATTATTTAGTACGCCCACAAAAATAACTGGTGTGCATTTTGTTAAGGGGGTGGTTATATTCCATGATGTGTTGGACAATGAATACAATGTTGGTGGTGCTCAAATCGGAGTGGAAGGTGTATATATATGGCCTTTTAAACAGCTTCGAATGGTAGCTAACAGCGGAAAAGAGGGAAATTCAAATCAGGATGAAGATTATATCTTATCTAATCCATATCATCTGCTTGGATTGTTCTCATCTCAGGTATTCCAAGAATCCTCACGAGATAAGACACAGAGAAGGAAACATTCGCCAATATATGACATGGAGAAACATTGTAATATTGAAATTGCAGCTCAGTTTTCACGCCTATCATCATCAAAGAGTGATGGGGAACGTGATCGATTCCACCTAGAAGGTTTGATGGAGAGTCCCTCAGTGGATGATGATGGGGATTGCTTCTCACCTTTAACGTTAAATGCAACTTCTGTTAACATTGAGGTCTACTATAACAAAGCAGTGAACTACACCTTGATGGTTACCTTTATCTCTTTCTTGCAAGTTCTTCTATTGATTCGGCAAATGGAACATAGCAACACTCAATCTGGGGCTGCTAAGGTTTCAATTATCATGATTGGCCAACAGGCTATAATGGATGCTTATCTTTGCCTTTTACATCTGACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCTTTTTTCAAGTTTGTGGTCTTCTCGATATTTGAGATGAGATATCTCCTTGCGATATGGAAGGCAAATAGACCTTTGAGTAATGGGGAAGGTTGGGAGACAATGAGGCGTGAGCTCTCATCTTTATACATTCGTTTCTATGGGATCCTGGTGGGAGGAATTCTGTTCATGTACCAGTTCCATTATTATTTGAGACCTATACTTCTTCTCATGTACTCATTTTGGATACCTCAGATAATTACCAATGTTATTCGAGATTCACGCAAACCATTGCATCCTCATTATATCTTAGGGATCACTGTCACTCGCCTGGCAGTGCCATTATATATATTTGGTTGCCCGAAAAACTTCATGCGCATTGAACCAGACAAGAGCTGGTGTTTGTGTTTGGCTACATTTATTGGACTTCAGGTTGCCATTCTTCTACTTCAGAACTATCTTGGGTCCCGCTGGTTCATTCCTCGTCAGATTCTGCCCGAGAAATACAGCTATTACAGGAGGTTTGGTCAAAATACAAATCATGCTACAGATTGTGTTATTTGCATGACGGCTATTGATCTTTCTCAGCGATCAAATGATTGCATGGTGACACCTTGTGAGCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAAATGGAGTGCCCGACATGCCGGCGCCCTCTGCCGCCTGCTTAG 1725 0.4023 MLCLGFDMVDPEKLNFCLFKRKGLGFLFQIVYVGWVVLLLLRPVAGLRPLRERTRSWSDEWLFSTKDESDQFSQWNITGTYKGTWNFLDTANGSSRFSDMRKTNGNSVIELFSTPTKITGVHFVKGVVIFHDVLDNEYNVGGAQIGVEGVYIWPFKQLRMVANSGKEGNSNQDEDYILSNPYHLLGLFSSQVFQESSRDKTQRRKHSPIYDMEKHCNIEIAAQFSRLSSSKSDGERDRFHLEGLMESPSVDDDGDCFSPLTLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSIIMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETMRRELSSLYIRFYGILVGGILFMYQFHYYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAVPLYIFGCPKNFMRIEPDKSWCLCLATFIGLQVAILLLQNYLGSRWFIPRQILPEKYSYYRRFGQNTNHATDCVICMTAIDLSQRSNDCMVTPCEHFFHSGCLQRWMDIKMECPTCRRPLPPA 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0770 574 FunFam E3 ubiquitin-protein ligase, putative 510 574 - -
Lele10g0770 574 PANTHER RING ZINC FINGER PROTEIN 110 573 - -
Lele10g0770 574 ProSiteProfiles Zinc finger RING-type profile. 524 568 IPR001841 -
Lele10g0770 574 SUPERFAMILY RING/U-box 523 573 - -
Lele10g0770 574 SMART ring_2 524 567 IPR001841 -
Lele10g0770 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 574 IPR013083 -
Lele10g0770 574 SMART ringv_2 523 568 IPR011016 GO:0008270
Lele10g0770 574 Pfam Ring finger domain 523 568 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0770 Lele-ChrLele10 5990065 5998090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0770 519 574 C3H Transcription Factor Family AT2G35420 37.500 8.23e-08 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0770 10 5990065 5998090 Lele10g0770 10 5990065 5998090 ECH
Lele10g0770 10 5990065 5998090 Lele11g0849 11 8503417 8511101 hybridization
Lele10g0770 10 5990065 5998090 Lele12g0494 12 13083301 13091236 hybridization