Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0765 ATGAGCAGCGTCTGCGCTGATCAGCACAAGTTCCTTCCCTTCTCCCCCAATAAATCCCTCCTCGATATCCCTCCCAGGAAGCTACTCACTCGTCGTTCCGCCACCGCCGCCATCCACGACCCCGACATGTTTCCTGACTCCCCTCGCTTTTCCTCCTCTGACGAGGCTTTCCTTCACAAGTTTCTCCCTCGTAACAACCTCAACGTGGATTCTGACGACGATGACTCTGATCCCTATACCTCCGACCATTTTCGCATGTACGAGTTTAAGGTACGCCGTTGCAACCGTAGCCGCAGCCACGACTGGACCGACTGCCCCTTCGCTCACCCTGGTGAGAAGGCTCGCCGTCGTGATCCCCGCCGGTTTCACTACTCCGGCAGTGTTTGCCCCGAGTATCGCCGTGGCGGGTGCAGCAGCGGTGATAGCTGCGAGTTTGCGCATGGTGTGTTCGAGTGTTGGCTTCATCCTGCAAGGTACAGAACTGAGGCTTGTAAAGATGGGAAGAATTGTAAGCGAAAGGTTTGTTTCTTCGCTCACACACCTCGCCAGCTGAGAATTTTGCCTTTTAATTCTCAGTCCCACAATTCTTCTTCACCCGCCAACCACCATCACTCTTCATGCAAGAATCATCATAACAAATTCCTGAACCCTACCACTGGATCCAACAATTGCTACTTGTTCTGTCACCATTGCGGCGCTGCTGGTTCCACTTCGTCTCCGACATCGACGCTGTTTGGGATGTCCCACATGTCGCCGCCACTCTCGCCGTCGTCATCCCCTATTTCACCGCCTCTTTCTCCGGTGAAACGCCGATCGACTGCGAACGCAGTGTCGCCAATCTCTCGATATTGTGACAGACTTGCAGGATGCGAGACATCATCTAGCAGGTTGATGAATAATCATGGGCTTGCGAGCTATAAATATGCTCTCACTGAATTAATGAACTCCTTGGAGGGTCTGAATTTCATTGAAGCCAATGCTTCGCCTGTTTCTGCAACAAAACCCCCAAATCTGCCATGGCTTGATACGTCTCTTATTAACTGTGAAGAGCAGCAGAACCAGTTCATTCTTTCACCGGCCACTTCTTTTAGCTGTGAAAATCAGCAGCAGCAACAACAACAGTTCATTCTTTCGCCATCCGCTCATACAACAACTCCAACAACAGCATCTTCTGTTTCTTCATCAAGCTTCTCCAATGGGAAATTATATCCAAACAGTGCATTTCTCAGCTGTGAGAGCAAGGTTGTTTCAAACGATAACGGGTCCTCCTGCTCAGCCCCAGATCTCGGGTGGGTGAACGAGCTGCTGATGTAG 1314 0.5107 MSSVCADQHKFLPFSPNKSLLDIPPRKLLTRRSATAAIHDPDMFPDSPRFSSSDEAFLHKFLPRNNLNVDSDDDDSDPYTSDHFRMYEFKVRRCNRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGSVCPEYRRGGCSSGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPFNSQSHNSSSPANHHHSSCKNHHNKFLNPTTGSNNCYLFCHHCGAAGSTSSPTSTLFGMSHMSPPLSPSSSPISPPLSPVKRRSTANAVSPISRYCDRLAGCETSSSRLMNNHGLASYKYALTELMNSLEGLNFIEANASPVSATKPPNLPWLDTSLINCEEQQNQFILSPATSFSCENQQQQQQQFILSPSAHTTTPTTASSVSSSSFSNGKLYPNSAFLSCESKVVSNDNGSSCSAPDLGWVNELLM 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0765 437 ProSiteProfiles Zinc finger C3H1-type profile. 124 150 IPR000571 GO:0046872
Lele10g0765 437 Gene3D - 123 186 - -
Lele10g0765 437 FunFam Zinc finger CCCH domain-containing protein 66 81 149 - -
Lele10g0765 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 148 IPR000571 GO:0046872
Lele10g0765 437 SMART c3hfinal6 158 181 IPR000571 GO:0046872
Lele10g0765 437 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Lele10g0765 437 PANTHER UNKEMPT FAMILY MEMBER 36 436 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0765 Lele-ChrLele10 5950522 5951835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0765 73 379 C2H2 Transcription Factor Family AT5G12850 36.741 9.30e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele10g0765 zf-CCCH 6.9e-05 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0765 10 5950522 5951835 Lele10g0765 10 5950522 5951835 ECH
Lele10g0765 10 5950522 5951835 Lele11g0846 11 8480764 8482217 hybridization
Lele10g0765 10 5950522 5951835 Lele12g0499 12 13137863 13139182 hybridization