Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0758 ATGCTTGCGGTGTCACCTCTTAGAAGCACAAATGATGAAGAAGGACAAGGAGAGATGGAGAGATTTTCGATGGATGTTCATGAATTCGGTGACCGCTCCGATGGGAATTTATTGGAAAGCATCAACTTCGACGATATCTTCGTCGGCATCAACGACGGAGATGTCTTGCCGGATTTGGAAATGGACCCCGAGATCTTTGCCGACTTCTCCCTCAGCGCCGGCGAGGACTCCGAGATAGCCACGTCATCATCGGTCTCGGTGGAAAACGTCAACAACTATAATAATAAAGTTGACCAGAATATTATAAAGCAGTCGACGACGAAGAAAGTAGAGGAAGATAAAGTGTCGTCGGATTCGGGTTCCGGTTCGGGTTCGAATTCCGGAGAGGAGATAGTGAGCAAAAGGGATGAATCCGCGGTTTTTAAGCCGTCTCAGAAGGAAGCTGACAAAGGAAGAAAATTGTCAGCTGAATCAAAGAATTCTCAAGGGAAGAGAAAAGTGAAGGTAGATTGGACTCCAGAATTGCACAGGAGATTCGTGCAAGCAGTGGAGCAACTAGGAGTGGATAAGGCGGTGCCTTCTAGAATTCTGGAAATTATGGGAATTGATTGTCTTACTCGCCATAACATAGCCAGCCATCTCCAAAAATACCGATCCCATAGGAAACATATGATGGCACGCGAAGCAGAAGCGGCAAACTGGAGCAAGAGAAAGCAATGTTATGGTATAGTTGGACGAGGAGGAGGTAAGAGAGAGGGAAGCCCTTGGCTGGCAGTAGCACCGACGATAGGTTTCCCTCCGATGACGCCGCCCCCGCCAATGCAGCATTTTGGAGCCTTGCATGTGTGGGGTCATCCCACCATGGACCACTCCTTCATGCCATTGTGGCCTAAGCATCTCCCTCCACACTCCCCTTCGCCGCCGGCCCTCGCTTGGGCTCCGCTCCCTCCCCCGCCTCTTGACCCTTCCTATTGGCACCAACCGGCTTCCAGTGCATTAACGCCAGGAACACCTTGCTTCCCACAGCCTCTGACTACAACGGGCTTAAAGCTCCAGCGCTTGACAGTGTCATGGGTGAATTACAGAGACAAGGAATTCCAAAAGTTCCCCCCTCTTGTGCTTGATAATGATGATCATCACTTTGCTCTTCATCAACAGCATTCATATCCCTCTACCACTAATTCAGAGGTTTTCCCCATTTTCTGGGTTGCTGCTGCTGCTGTGAAGGGCCCTACAAAACCCTAA 1245 0.498 MLAVSPLRSTNDEEGQGEMERFSMDVHEFGDRSDGNLLESINFDDIFVGINDGDVLPDLEMDPEIFADFSLSAGEDSEIATSSSVSVENVNNYNNKVDQNIIKQSTTKKVEEDKVSSDSGSGSGSNSGEEIVSKRDESAVFKPSQKEADKGRKLSAESKNSQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHMMAREAEAANWSKRKQCYGIVGRGGGKREGSPWLAVAPTIGFPPMTPPPPMQHFGALHVWGHPTMDHSFMPLWPKHLPPHSPSPPALAWAPLPPPPLDPSYWHQPASSALTPGTPCFPQPLTTTGLKLQRLTVSWVNYRDKEFQKFPPLVLDNDDHHFALHQQHSYPSTTNSEVFPIFWVAAAAVKGPTKP 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0758 414 MobiDBLite consensus disorder prediction 104 168 - -
Lele10g0758 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 222 IPR017930 -
Lele10g0758 414 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 166 220 IPR006447 GO:0003677
Lele10g0758 414 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 357 IPR044825 GO:0003700|GO:0045893
Lele10g0758 414 MobiDBLite consensus disorder prediction 130 168 - -
Lele10g0758 414 FunFam Two-component response regulator 162 225 - -
Lele10g0758 414 Pfam Myb-like DNA-binding domain 169 218 IPR001005 -
Lele10g0758 414 SUPERFAMILY Homeodomain-like 164 223 IPR009057 -
Lele10g0758 414 Gene3D - 163 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0758 Lele-ChrLele10 5886221 5890047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0758 1 342 G2-like Transcription Factor Family AT5G44190 38.162 3.96e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele10g0758 Myb_DNA-binding 5.2e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0758 10 5886221 5890047 Lele10g0758 10 5886221 5890047 ECH
Lele10g0758 10 5886221 5890047 Lele11g0838 11 8430795 8434355 hybridization
Lele10g0758 10 5886221 5890047 Lele12g0506 12 13233797 13237430 hybridization