Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0752 ATGGATGATGCAGAAATCTTAAGTGGTTTTTCTCATGATCATCAGAACCCAACTGATCATCATCTTGAATCTAGTAACAACAACAATAATCCTCCTGTTTCGAAGAGGAAGAGAAACCTCCCAGGGAATCCAGATCCTGAAGCAGAGGTCATAGCGTTATCGCCCAAGACGCTGATGGCGACCAACAGATTCTTGTGTGAAATCTGTGGGAAGGGTTTTCAAAGGGATCAGAATCTGCAGCTGCATAGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAGAGAACAAGCAAAGAACCAAGGAAGAGAGTGTATGTGTGCCCTGAGAAGACATGTGTCCACCATGACCCATCAAGGGCATTGGGAGACTTAACAGGAATAAAGAAGCACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGAGATATGCTGTCCAATCTGACTGGAAAGCTCACTCTAAGACCTGTGGCACTAGAGAATACAAATGTGATTGTGGCACCATCTTTTCACGGAGGGACAGTTTCATAACTCACAGGGCATTCTGCGATGCATTAGCAGAAGAGACAGCAAGAGTGAATGCATCATCCACAGTGAACAACTCCTTAATGGGTTACAATATCGTCATGGGAAATTCCCAACAAGGGCCTGCTGGCATAAGTATGATGACAACACATTTTCCTTCGATTTTCAAGCCAATTTCAAACACTACTGGTACTGCTGAAACAAATCATCAAGCCCCTAGTAGGCTATCTCTATGGATGGGTCCAACTCATGAAACAATGGCCTCTAATTTGAACTGTAATAACAATAACAAGTTTGAGATTCATCATCATCAACTTGGATCAGTCGTCACGAGCTCATCATCATCAGGATCAATACTATTTGGGAACAACCGGCTTGTTTCATGCTCAAATCCGCAGCTGAATTGGGTGTTTGGGAGTAATAATAATAATAAGAACGGTAGTCGTCATCCTCAAGATCAGCTGATCAGTGTTCCTTCCTTGTACAGCTCCCAACATCAGCAATCCCATCAAACATCCTCGGCAAACATGTCGGCGACAGCCTTGTTGCAGAAAGCTGCTCAAATCGGGGCAACTTCAACCGACACGTCATTCCTGGGAAGCTTAGGGTTGAAATGCAGCTACGGTCAAGAACAAGAAGGGAACGATTTTTGCGGAATCTATGGTTCAGGTTCAGTACTCGTATCTAGCATGGGAAGCGAGACGACAGAGAATCCTGCAAAACGGAGGAATATAGGGCAGAAAGAAGAGAATAATGGAGGAGAGCAAACTAGGGATTTTCTGGGCGTGGGAGTGGAATCCATTTGCCATGCTGCTCCAATGAACGGATGGATTTGA 1377 0.4459 MDDAEILSGFSHDHQNPTDHHLESSNNNNNPPVSKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEPRKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNASSTVNNSLMGYNIVMGNSQQGPAGISMMTTHFPSIFKPISNTTGTAETNHQAPSRLSLWMGPTHETMASNLNCNNNNKFEIHHHQLGSVVTSSSSSGSILFGNNRLVSCSNPQLNWVFGSNNNNKNGSRHPQDQLISVPSLYSSQHQQSHQTSSANMSATALLQKAAQIGATSTDTSFLGSLGLKCSYGQEQEGNDFCGIYGSGSVLVSSMGSETTENPAKRRNIGQKEENNGGEQTRDFLGVGVESICHAAPMNGWI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0752 458 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Lele10g0752 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Lele10g0752 458 MobiDBLite consensus disorder prediction 411 437 - -
Lele10g0752 458 SMART c2h2final6 105 135 IPR013087 -
Lele10g0752 458 SMART c2h2final6 140 160 IPR013087 -
Lele10g0752 458 SMART c2h2final6 64 86 IPR013087 -
Lele10g0752 458 MobiDBLite consensus disorder prediction 1 20 - -
Lele10g0752 458 MobiDBLite consensus disorder prediction 1 47 - -
Lele10g0752 458 Gene3D Classic Zinc Finger 60 87 - -
Lele10g0752 458 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Lele10g0752 458 Gene3D Classic Zinc Finger 98 188 - -
Lele10g0752 458 FunFam protein indeterminate-domain 12-like 43 111 - -
Lele10g0752 458 MobiDBLite consensus disorder prediction 21 36 - -
Lele10g0752 458 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 446 IPR031140 -
Lele10g0752 458 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Lele10g0752 458 MobiDBLite consensus disorder prediction 421 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0752 Lele-ChrLele10 5787445 5789943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0752 30 458 IDZ Gene Family AT1G03840 50.992 1.61e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele10g0752 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0752 10 5787445 5789943 Lele10g0752 10 5787445 5789943 ECH
Lele10g0752 10 5787445 5789943 Lele11g0834 11 8387396 8392279 hybridization
Lele10g0752 10 5787445 5789943 Lele12g0518 12 13445739 13450286 hybridization