Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0731 ATGGAAGGCTTTGCTTGGAGTTCACCAGGTATTTGTGGAAATGCCTCAGAGAAAAGTAGTCATGGTTTTAGAGTTGATAATTCTGGTGTTATGGAAACTGGGTTTGCTTCATCTTCTTCTCTGGTTTTGGATAACCAGATAGTTCAAGAACTAAACAAGGGCCTGTCGTCCTCTGAGAGAAGCGTCGCGGCTTTGAAGAACCATAGCGAGGCAGAACGAAGAAGAAGAGCAAGGATCAATGCTCATCTTGATACTCTTCGCACAGTGATTCCAGGTGCTAACAAGATGGATAAAGCATCATTACTTGGTGAGGTGATCAGACATTTGAAAGATCTAAAAGGGAATGCAGCAGAAGCTTGTGAGGGTTTAATGGTACCAAAGGACAGTGACGAGATAAGAGTTGAAGAACAAGAAGGTGGTTCTAATGGTTTTCCTTATTCAATTAGGGCGTCACTGTGTTGTGAGTATAAACCTGGGTTGTTGTCTGATATAAGACAAGCACTTGATGCTCTTCATCTGATGATAATGAAGGCAGAGATTGCGACATTAGGAGGGAGGATGAAGAATGTGTTTGTGATAATAAGCAGTGAAGAGCATATTAACATTGAAGATTCTGAGTATAGACAGTTTCTTGCTGGTTCTGTTCATCAAGCTCTTAAGTCTGTGGTTGATAGATTCTCCCCTTCACAGGATCTCTTAGGAATCAGAAAGAGAAGGAGGATTTCTGTGTTCAATTCATCATCTCTAGGTGAATTCTGGAAAGCTGAGACTGACCTTCGTTCTGTTGAGTCTCCATCAATCTGTCGAAACAAACTCGCAACCTATTTCAACAAAATTCGATTCCTTCATGTGATTTATCTGCTGTTCTACTTGCTGCCTTCAAATTTTCAGTCTCTTTCTCTCTCTTTCCGTCAATCATGGCACAGGAAGAGAAGAAATCTGACATTGAGAAAATTAGAGACCAAAGCCAACAGGGCTGATGAATGGGATGTGAACAAATGGGCATGGGAAGGGACATTGAAAGTCATTAGCAAGGGAGAACTAAGCATTATAAAACTTGAAGATAGGAAAACAGATGAACTATATGCTTGGGCATTTTTAAGAAATGGAGAGCCGCATCCTTTGGAGCCTGTCATTGACAACAGCAGGGGTGGCATTGATACTGAGCAGAAAAGTGACCAAAATATAAAATCCAAGTTGCTTGAGCAGGGTCAGAACAGACCCTCAGAAGAAAAATGTGATACAAAAGAATCCAAACAACTTAGCATTAAGTTACCACCCCCACCACCCCCAGGATCTCCTTCTACTGCCTCACAGATATCTCCTTCTACTGCCTCGCAGACATATCCAACAAATTTCAGCCCTGAGAAAACTCCCAGAGATGAGAAGCGTAAAATAGACAAAAAAGACCAAGAACATCAGAGTTTTCCAGAAAATCAGAGCACGCAGGATATACCAGATGATGATTTGGCGACTTTCAAACAGCGGATTAACCTTGTTTACCACACTGACATGTCTGTGTTCCAGCGCTTTGATCTTTATCTTGTACGTTTCGAATCTTTGATGGTTACAAGGAATGTGTAA 1584 0.4141 MEGFAWSSPGICGNASEKSSHGFRVDNSGVMETGFASSSSLVLDNQIVQELNKGLSSSERSVAALKNHSEAERRRRARINAHLDTLRTVIPGANKMDKASLLGEVIRHLKDLKGNAAEACEGLMVPKDSDEIRVEEQEGGSNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIMKAEIATLGGRMKNVFVIISSEEHINIEDSEYRQFLAGSVHQALKSVVDRFSPSQDLLGIRKRRRISVFNSSSLGEFWKAETDLRSVESPSICRNKLATYFNKIRFLHVIYLLFYLLPSNFQSLSLSFRQSWHRKRRNLTLRKLETKANRADEWDVNKWAWEGTLKVISKGELSIIKLEDRKTDELYAWAFLRNGEPHPLEPVIDNSRGGIDTEQKSDQNIKSKLLEQGQNRPSEEKCDTKESKQLSIKLPPPPPPGSPSTASQISPSTASQTYPTNFSPEKTPRDEKRKIDKKDQEHQSFPENQSTQDIPDDDLATFKQRINLVYHTDMSVFQRFDLYLVRFESLMVTRNV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0731 527 MobiDBLite consensus disorder prediction 404 419 - -
Lele10g0731 527 MobiDBLite consensus disorder prediction 437 455 - -
Lele10g0731 527 CDD ACT_UUR-ACR-like 151 219 - -
Lele10g0731 527 Pfam Helix-loop-helix DNA-binding domain 67 112 IPR011598 GO:0046983
Lele10g0731 527 SUPERFAMILY PH domain-like 321 384 - -
Lele10g0731 527 Gene3D - 59 120 IPR036638 GO:0046983
Lele10g0731 527 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 117 IPR036638 GO:0046983
Lele10g0731 527 PANTHER TRANSCRIPTION FACTOR BHLH30 35 246 IPR045847 GO:0003700|GO:0006355
Lele10g0731 527 SMART finulus 69 118 IPR011598 GO:0046983
Lele10g0731 527 Gene3D - 314 395 IPR011993 -
Lele10g0731 527 Pfam Protein of unknown function (DUF1681) 321 383 IPR012466 GO:0006897|GO:0016020
Lele10g0731 527 MobiDBLite consensus disorder prediction 400 487 - -
Lele10g0731 527 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Lele10g0731 527 MobiDBLite consensus disorder prediction 456 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0731 Lele-ChrLele10 5599310 5605650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0731 60 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.367 1.26e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele10g0731 DUF1681 2.3e-09 CL0266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0731 10 5599310 5605650 Lele10g0731 10 5599310 5605650 ECH
Lele10g0731 10 5599310 5605650 Lele12g0536 12 13659389 13664991 hybridization