Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0729 ATGTCGCAATCTGGGAAGTCTGTGCGAGAACTTGGCTATGACTCTCTTGCGACTCGATTCGGTGATTCGCTGACTTGTGAAGAGAACAAGCCCGATTTCAAAGAACTCGATTTGGGTTCGTTCGTTTCGCCATTAAAAATCCGCGGCGCAGTTAATGCTTCCTGCGGCAGTGGAGCTGCTGCCACTTCGAGCTCGAGCTCGAGCTCGAGTTCCTCCGGCTCTGTCACAGGCAGAAGCAACGTTCCCAAGTTGCCCAGAAGACCCGACGGAAAACCAAACCACCATTCCGGTGAGCTCACTGGCTATTTCGATGCCAGCCCGAATGCCTCAGAGAGCCTCCGATCTGCTTCCGCAACAAGCAATTCCAAGCCGGGTCATCGGAGATCGGTTTCTGCTGGAGCCCCATTAATCTACTCCGGTGGAACTCATAGCAGCCCGGGGAGTAATAATTGCTCGAACACTGCAACTTCAGGGACCAATTTATTCCCAACTGGTAATATTTGTCCTTCCGGGAAGATCCTCAAATCGGGTACGGTGTCTCGAGCTTCCAATAGAACTGATGTGTTGGGTTCTGGAACGGCAAACTATGGCCATGGTAATATAATGCGTGCTGGCGCGAAATTGAGCAATTCTGGGCACGTCGTGGATGACAATGGGGCTGGGAATCCTCAGCTTGGTGGAGCATCGGGGTCCGTTAGACGAGCAATGAGTGGTTCTGATCCGGAAGAGATGAAGACGACTGGGAATGCTTTATATAGAAGCGGTAATTTTGTGGAGGCATTGTCATTGTACGATCGTGCTATTTCGATATCGCCAAATAATGCAGCCTACCGGAGTAACAGGGCCGCGGCGTTGACGGCGTTGGGGAGACTGGCTGAGGCAGCGATGGAGTGTGAAGAGGCTGTGAAGTTGGACCCTAATTATGTACGGGCACATCAGAGGCTGGCTTCTCTTTGCCTGCGCTTTGGATGTGTTGAACGCGCCAAGCGCCACCTCTATCTCCCTGGGCAACACGTGGATCAATCTGAACTGCAGAAGCTGAGGTTATTGGAGAAACATATAAACCAATGTGCAGCGGCAAGGAAGATTGGCGATTGGAAGATTGCACTTGGGGAATCCAATGCAGCCATTACAGTTGGAGCAGATTCCTCACCTGAGCTTGTTGCTTGTAAAGTGGAAGCTTATTTAAAACTCCATCAACTTGAGGATGCTGAGTCCAGTCTCTCAAACATTCCAAAGTTGGAAGGTGGTCCTTTATCCTGCTCTCAAACCAAGTTCTTTGGTATGGTTGGTGAAGCCTATGTGCACTTGGTTCATGCTCAGGTTCAGATGGCCACGGGAAGATTTGATAATGCGGTAGCATCAGCTGAAAAGGCTAGACTGTCAGATTACAGCAATGTAGAAGTTGAGAAGATTCTAAATACTGTGAAAATGGTAGCAAGAGCTCGCTCAAAGGGAAACGATCTCTTTAGCTCCGGCAAATTTTCTGAAGCTTATTCTGCTTATGGTGAAGGCCTCAAATATGACAGCTACAACTACGTTCTTTATTGTAATAGAGCTGTTTGTTCGTCTAAACTAGGACTATGGGAAAAATCTGTTGAGGATTGTAACCAAGCTCTCAACATTCAACCAAATTACATCAAGGCCCTCTTTCGCAGGGCTGCATCAAATGCAAAGATTGAAAGATGGGCTGAAGTTGTGAAAGATTATGAGGCCTTGAAACGAGAACTCCCGGGAGACAATGAAGTTGTTGAATCCCTTCGTAAGGCTCAGCTAGCTTTAATAAAATCTCGTGGAGAGGACCGTGCTGGAAAGCTTGAAGTTGAAGTCGGAGCTGTCTCTTCGTTGGATGAATTTAAAGCTGCTATTGCTTCTGCTGGTATCTCAGTAGTTCATTTCAAAGAGGCATCAGATGAACTATGCGGAGAAATATCCCCATTCATAAATATGCTGTGCGTCAGATACCCATCTATTAAATTTATCAAGGTTGATGTGGAGGCGTGTTTAGCTATAGCAAGAGCTGAGAGCATAAGAACTGTGCCAACGTTCAAAATTTATAAAAATGGAACGAAGGTGAAGGAGATGATTCGGCCAACGCATAAGTTCTTAGAGGAGTCAGTAAGAAGCTGTAGTTCCCTCTGA 2142 0.4729 MSQSGKSVRELGYDSLATRFGDSLTCEENKPDFKELDLGSFVSPLKIRGAVNASCGSGAAATSSSSSSSSSSGSVTGRSNVPKLPRRPDGKPNHHSGELTGYFDASPNASESLRSASATSNSKPGHRRSVSAGAPLIYSGGTHSSPGSNNCSNTATSGTNLFPTGNICPSGKILKSGTVSRASNRTDVLGSGTANYGHGNIMRAGAKLSNSGHVVDDNGAGNPQLGGASGSVRRAMSGSDPEEMKTTGNALYRSGNFVEALSLYDRAISISPNNAAYRSNRAAALTALGRLAEAAMECEEAVKLDPNYVRAHQRLASLCLRFGCVERAKRHLYLPGQHVDQSELQKLRLLEKHINQCAAARKIGDWKIALGESNAAITVGADSSPELVACKVEAYLKLHQLEDAESSLSNIPKLEGGPLSCSQTKFFGMVGEAYVHLVHAQVQMATGRFDNAVASAEKARLSDYSNVEVEKILNTVKMVARARSKGNDLFSSGKFSEAYSAYGEGLKYDSYNYVLYCNRAVCSSKLGLWEKSVEDCNQALNIQPNYIKALFRRAASNAKIERWAEVVKDYEALKRELPGDNEVVESLRKAQLALIKSRGEDRAGKLEVEVGAVSSLDEFKAAIASAGISVVHFKEASDELCGEISPFINMLCVRYPSIKFIKVDVEACLAIARAESIRTVPTFKIYKNGTKVKEMIRPTHKFLEESVRSCSSL 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0729 713 MobiDBLite consensus disorder prediction 218 245 - -
Lele10g0729 713 Gene3D Tetratricopeptide repeat domain 239 598 IPR011990 GO:0005515
Lele10g0729 713 Pfam Thioredoxin 616 698 IPR013766 -
Lele10g0729 713 Pfam TPR repeat 248 289 - -
Lele10g0729 713 Gene3D Glutaredoxin 599 710 - -
Lele10g0729 713 MobiDBLite consensus disorder prediction 54 152 - -
Lele10g0729 713 MobiDBLite consensus disorder prediction 56 79 - -
Lele10g0729 713 SUPERFAMILY TPR-like 242 331 IPR011990 GO:0005515
Lele10g0729 713 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 708 IPR044534 -
Lele10g0729 713 MobiDBLite consensus disorder prediction 103 127 - -
Lele10g0729 713 SUPERFAMILY Thioredoxin-like 613 698 IPR036249 -
Lele10g0729 713 FunFam TPR repeat-containing thioredoxin TTL4 605 711 - -
Lele10g0729 713 SUPERFAMILY TPR-like 478 591 IPR011990 GO:0005515
Lele10g0729 713 SMART tpr_5 275 308 IPR019734 GO:0005515
Lele10g0729 713 SMART tpr_5 547 580 IPR019734 GO:0005515
Lele10g0729 713 SMART tpr_5 433 466 IPR019734 GO:0005515
Lele10g0729 713 SMART tpr_5 513 546 IPR019734 GO:0005515
Lele10g0729 713 SMART tpr_5 241 274 IPR019734 GO:0005515
Lele10g0729 713 SMART tpr_5 479 512 IPR019734 GO:0005515
Lele10g0729 713 CDD TRX_family 617 698 - -
Lele10g0729 713 ProSiteProfiles TPR repeat profile. 241 274 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0729 Lele-ChrLele10 5572375 5575242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0729 478 551 U-box Gene Family AT3G07370 32.432 2.61e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0774 29 5013879 5018055 Lele10g0729 10 5572375 5575242 CCT
Lele30g0629 30 10979880 10984089 Lele10g0729 10 5572375 5575242 CCT
Lele10g0729 10 5572375 5575242 Lele10g0729 10 5572375 5575242 ECH
Lele10g0729 10 5572375 5575242 Lele11g0805 11 8141118 8144201 hybridization
Lele10g0729 10 5572375 5575242 Lele12g0538 12 13693326 13696191 hybridization