Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0718 ATGGGAAAAGAGAAATCATATTTAGAAGAAAGTTTGAAGTTACTAAAAATGGCCGAGAATATATACTACATATCTGACGACGACGGCAAGAGCGAAGGTACTCATGAAATGGAAGCTAGACCTAATAAGAAACGTTCATTCTTGGACTTGAATGAAGGAGCTGTGGTGGGTGACGACGATGGAGAAACGAGTGTTGATGATAGATCGTGGTCTCCAGAAGGGAATATGAGTAGCAATAACTCAAGCACAGATCAAGTGATGAGAGAACGAACAGCGAGTGTTAGGCAATACGTGAGGTCCAAAATGCCAAGGCTTCGTTGGACTCCTGATCTCCATCTTGCTTTTGTTCTTGCTGTTGAGAGGCTTGGTGGACAAGAAAGAGCAACTCCCAAGTTGGTTCTTCAGCTGATGAATGTGAAAGGACTTAGTATTGCACATGTAAAAAGTCATTTGCAGATGTATCGAAGTAAAAAGCTTGATGAGTCTGCCCAAGTGTTATCTCATCAAAATAGGGGAATGCAAGGAAGAGCACACATTGAGGAGATGTACGAAATATATAATAAAGGGCAAGGCCACTTTGGGACACATAACAGAAACTATCAACCGTCATCCGTGTTCATGAAACATCCGTATGACTTCAAAGCCCCAGAATCTTCAAGGTTTCAGCCATATGGGATAGTGAATAACCAGTGGAGCAATATGAACAAGATAGGGAAATCACACCTATTTGATGTAAGAGATGCAATAACAAGAAGTGGATCTATTGGATGCAGAGAATTTATCGAAGAAAAGAGATGGCCTCATGCTGAAATACAAGTCAGTGACAGACCTAGGATTTCTTGGGACGACAAGTATAATAATAATAATAATAGTTCCCCTCTTTGGAGAACCAAAGCTAGTTCTACAGCTCCTGTCTTTTCGTCGACTCATGCGCAATTCCATGCTAAGGTACGTAGCTACTGA 963 0.4123 MGKEKSYLEESLKLLKMAENIYYISDDDGKSEGTHEMEARPNKKRSFLDLNEGAVVGDDDGETSVDDRSWSPEGNMSSNNSSTDQVMRERTASVRQYVRSKMPRLRWTPDLHLAFVLAVERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDESAQVLSHQNRGMQGRAHIEEMYEIYNKGQGHFGTHNRNYQPSSVFMKHPYDFKAPESSRFQPYGIVNNQWSNMNKIGKSHLFDVRDAITRSGSIGCREFIEEKRWPHAEIQVSDRPRISWDDKYNNNNNSSPLWRTKASSTAPVFSSTHAQFHAKVRSY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0718 320 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 71 238 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lele10g0718 320 FunFam Myb family transcription factor 101 159 - -
Lele10g0718 320 MobiDBLite consensus disorder prediction 25 90 - -
Lele10g0718 320 MobiDBLite consensus disorder prediction 25 47 - -
Lele10g0718 320 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 158 IPR006447 GO:0003677
Lele10g0718 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 159 IPR017930 -
Lele10g0718 320 Pfam Myb-like DNA-binding domain 105 155 IPR001005 -
Lele10g0718 320 SUPERFAMILY Homeodomain-like 101 157 IPR009057 -
Lele10g0718 320 MobiDBLite consensus disorder prediction 68 90 - -
Lele10g0718 320 Gene3D - 102 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0718 Lele-ChrLele10 5470310 5472055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0718 91 164 G2-like Transcription Factor Family AT2G42660 78.378 1.39e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele10g0718 Myb_DNA-binding 1.9e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0718 10 5470310 5472055 Lele10g0718 10 5470310 5472055 ECH
Lele10g0718 10 5470310 5472055 Lele11g0793 11 8026206 8030030 hybridization
Lele10g0718 10 5470310 5472055 Lele12g0549 12 13824618 13826948 hybridization