Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0714 ATGGACATCACTTCAAAGGATGCTGATCACAACGGTAAAAGTGACTTTGCAAATCTGCAAGTTGTTGCTGATAATGGGCTTCCATTGTTCACTTACAAGCAGTTGCATTCTTCAACTGATGCCTTTAACAAGTCAAATGTAATTGGCCACGGCGGTTTCGGACTTGTCTACCGGGGCTTGCTCAACAATGGCGGAAATGTAGCAATTAAATTCATGGATGAGGCACGAAAGAAAGGAGAAGAAGCATTTAAAATACAGGTGGAATTGCTGGGTCAATTGCGCTGTCCATATTTGCTAAAATTGCTTGGATATTGCTCTGATAATAATCATAAATTGCTGGTTTATGAGTTCATGGCAAATGGGAGTCTGCAAGAATATCTTTATCCTGTCAAAAACTTTGGATTAGCCAAGCTTGGATCTGATAAAGCCGGTGGACATGTTTCAACTCAAGTTTTGGGCACACACGGATATGTTGCCCCTGAATATGCACTAACTGGGCACTTAACAACAAATCAGATGTTTATAGTTATGGCTGTTTTACTTCTTGAACTGTTAACCGGTCGAGTACTCGTCGATGAGGAGAGACTTCCAGGGGAAGGCGTTCTTGTTTCTTGGCTTGTGGATCCTACATTGGTAGGTCAGTGCTCAATGAAAGAAGTTATTCCGGTAGCCGCCATTGCTGCACTTTGTGTGCAACCAGAGGCAGATTATAGACCTCTCAAGGCAGACGTAGTGCATTCATTGGCTCCACTAGTGAAGACCCACAGGGCAACAACCTCAAAAGTTGGTAACTACCCAAGTTTCCATGTCAATAAATCATCCCCACCTCAAGATTCAGTCAAAGCAACTATGTTACGCTTTGAATGA 867 0.4268 MDITSKDADHNGKSDFANLQVVADNGLPLFTYKQLHSSTDAFNKSNVIGHGGFGLVYRGLLNNGGNVAIKFMDEARKKGEEAFKIQVELLGQLRCPYLLKLLGYCSDNNHKLLVYEFMANGSLQEYLYPVKNFGLAKLGSDKAGGHVSTQVLGTHGYVAPEYALTGHLTTNQMFIVMAVLLLELLTGRVLVDEERLPGEGVLVSWLVDPTLVGQCSMKEVIPVAAIAALCVQPEADYRPLKADVVHSLAPLVKTHRATTSKVGNYPSFHVNKSSPPQDSVKATMLRFE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0714 288 FunFam Somatic embryogenesis receptor kinase 1 14 117 - -
Lele10g0714 288 ProSiteProfiles Protein kinase domain profile. 42 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele10g0714 288 Gene3D Phosphorylase Kinase; domain 1 3 117 - -
Lele10g0714 288 Gene3D Transferase(Phosphotransferase) domain 1 118 271 - -
Lele10g0714 288 SUPERFAMILY Protein kinase-like (PK-like) 27 261 IPR011009 -
Lele10g0714 288 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Lele10g0714 288 Pfam Protein tyrosine and serine/threonine kinase 45 127 IPR001245 GO:0004672|GO:0006468
Lele10g0714 288 PANTHER OS07G0668900 PROTEIN 25 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0714 Lele-ChrLele10 5439644 5443197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0714 5 280 Receptor kinase-like Gene Family AT3G58690 52.874 2.48e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lele10g0714 PK_Tyr_Ser-Thr 1.3e-13 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0714 10 5439644 5443197 Lele29g0631 29 3878619 3888753 CCT
Lele10g0714 10 5439644 5443197 Lele30g0767 30 12036181 12045341 CCT
Lele10g0714 10 5439644 5443197 Lele31g0911 31 16509495 16516605 CCT
Lele10g0714 10 5439644 5443197 Lele32g0615 32 3817959 3827265 CCT
Lele10g0714 10 5439644 5443197 Lele11g0788 11 7997942 8000452 hybridization