Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0618 ATGGAGGCGTTGCCGGCGAACAGAATTCCAAAGGAGTTCGTGAGAAGATTTGAGAATGAACTGTGTACTAGTGAAGCAACGATTGGTGTTCCAGATGGTCGTGTTTGGAAGATGGAACTGAAGAAATTTGAAAACGATGGTTCTGCAAGGAACTCTGTATCTGATCTATGCGGCCACAACACAAGAAGGAGCCAAAGGCATAAGGTGGCAGATGAAGAAGAAATAATCGAAATAGAAGATGAGAATAATGCATTAAGCCATGGTAAATCAGGAAACAAAGACAGATCTGGGGAAGAAATTTATAATTCAAGTAAGCATGAGAAAGAGAAAGAAAGATCTGGGCAAGGGCAAGGGCGTAGTTCCAAGATGAAGAAGAGAACTCTGAGTAAAAAGCAAAGAGCTTTGGAAGCTGCCCAGAATTTCAAACCAGAGAATGCATTTACTGCAATAATAAGGCCAGCTAATCTGAATCATCATTATCTGGATGTGCCAGCTTCATTTCGGAAGGCTTATATGGGGAAAATGAGTCCTACGAAGCTGCAGGATTGTGAAGGACGAGAATGGGAGGTGAATTATGGTAGGCACTTGTCAGGTATCCGAATACGGAAGGGTTGGATCAGTTTCGCAAGGGCCAATAATGTGAAGGAAGGAGACGTGTGTGCGTTTGAGCTTATCAAGAGGAAAAAGAGCTTCGTATTTCAAGTTACCATATTTCCCTGTTGA 723 0.4246 MEALPANRIPKEFVRRFENELCTSEATIGVPDGRVWKMELKKFENDGSARNSVSDLCGHNTRRSQRHKVADEEEIIEIEDENNALSHGKSGNKDRSGEEIYNSSKHEKEKERSGQGQGRSSKMKKRTLSKKQRALEAAQNFKPENAFTAIIRPANLNHHYLDVPASFRKAYMGKMSPTKLQDCEGREWEVNYGRHLSGIRIRKGWISFARANNVKEGDVCAFELIKRKKSFVFQVTIFPC 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0618 240 MobiDBLite consensus disorder prediction 45 132 - -
Lele10g0618 240 ProSiteProfiles B3 DNA-binding domain profile. 146 240 IPR003340 GO:0003677
Lele10g0618 240 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 238 IPR044837 -
Lele10g0618 240 CDD B3_DNA 147 239 IPR003340 GO:0003677
Lele10g0618 240 SMART B3_2 147 239 IPR003340 GO:0003677
Lele10g0618 240 Gene3D - 126 240 IPR015300 -
Lele10g0618 240 MobiDBLite consensus disorder prediction 80 118 - -
Lele10g0618 240 Pfam B3 DNA binding domain 148 238 IPR003340 GO:0003677
Lele10g0618 240 SUPERFAMILY DNA-binding pseudobarrel domain 146 238 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0618 Lele-ChrLele10 4566759 4568451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0618 93 238 REM Transcription Factor Family AT1G49480 32.667 1.26e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele10g0618 B3 1.1e-15 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0618 10 4566759 4568451 Lele11g0691 11 6554270 6557399 hybridization
Lele10g0618 10 4566759 4568451 Lele12g0649 12 14815701 14817402 hybridization