Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0594 ATGGATGGCTACTTCCATGTCCATAATGGTGACACTCATCTTCCTCCTGGGTTCCGCTTCCACCCAACTGACGAAGAACTCATTACATTTTACCTCCTCAAGAAGGTTCTAGACAACACCTTCGCAGGGAGAGCCATTGCTGAAGTTGATCTTAACAAGTGTGAACCATGGGAGCTTCCTGAGAAGGCGAAGATGGGTGAGAAAGAGTGGTACTTCTTCAGCCTCCGAGATCGAAAGTACCCAACTGGTCTGAGAACTAATAGGGCTACAGAAGCTGGATACTGGAAGGCAACTGGAAAAGACAGGGAGATTTACAGCTCCAAAACTTGCTGTCTCGTCGGAATGAAGAAGACTCTGGTGTTCTACCGAGGAAGAGCTCCAAAAGGAGAGAAGAGCAATTGGGTTATGCATGAGTATCGTCTTGAAGGCAAATTTGCTTATCACTATCTTTCACGTAGCTCCAAGGATGAATGGGTCATCTCGCGTGTTTTCCAAAAGAGTCTCTCCTCCACGGGGAACAGCAGCTCGGCCGTATCTTCCTCAGGTGGCTCCAAGAAGACGAACACGAGAATGAGCTCTTCTGTTAACATGAGCGTTTACCCAGAACCCAGTTCTCCTTCCTCCATCTACCTTCCTCCTCTGCTTGACTCGTCTCCTTACGCGGCCGCCAACGACCGTGACAGCTGCTCCTACGACGGCAGCAGCACTACTCCGAGGGAGCACGTGTCCTGTTTCTCCACATTCTCTGCGTCTGCTGCCGCCAACAACCTCTCCAATGTTAGCTATGAGCTCGCTCCTGCTCTTCCTCCACCGCCGTCAGTGGCTCTGAACCCATTTGCTCGATTCCAGAACAACGTTGGTGTTCCTGCGTTCCCAAGCCTGAGGTCACTGCAGGAGAATCTCCAACTTCCTTTCCTGACTCCAGCCATACCTCATGGTCCATCCGGTGGTGACATGAACGGTTGGGCTAAGCCGGAGGAGCAGACCTTGGCGGGTGGCGGTTCTTCTGGCATGTCGCTGTGTCCGTCGTCGGAGCTTGATTACATTGCAGGATCATTTTGGCAACTTTTTGCCACAGATTCGACAATCGATTGTGGGGATGATCTGGTGAAGAGGTTATCTGGTCTGAGTGGGAAGACAAGGGAGAGGTTATTGATTAACCAAGATGGATGGATAAAAGAGGAGAGAAGTTGGGGAGTTTCAAGTGTGAAGATTATAACAGCATTTAATGGGCAGTGGAAGAAGCAGATAGAGAGAGGGGTACGTACAAACAGGAACAGAGTATGGTCCTGTGCTGTGAGTGTTGTGAGGAGCAGGAAGCTAAAGAAGCCTGGCTCATTTTCACGTGGGGGCACTGAGACTGAGTCTAGCATTCTAGACTGATCATCGAATCACAGAGCAAAGGAAATAGGGAAGGAGAATGGTTGTTTCAATAAAGAAACACTTCCATTGAAGCATTTCACTGAAGGCCATGACTTGTTAATTCCCAACAACAAAACACACATCCTCTTTTGCTCTGCTCTCGCCATTCAACAGAACCGGGTGGTTGCAGAAGAAGAGAGCTACTCATACAGAGAGCATCATGATGCTACAGTAGTGCTTTGGGTGAGCCACGTGGAGGGCTGTGATGGGGTATAA 1638 0.4945 MDGYFHVHNGDTHLPPGFRFHPTDEELITFYLLKKVLDNTFAGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSLSSTGNSSSAVSSSGGSKKTNTRMSSSVNMSVYPEPSSPSSIYLPPLLDSSPYAAANDRDSCSYDGSSTTPREHVSCFSTFSASAAANNLSNVSYELAPALPPPPSVALNPFARFQNNVGVPAFPSLRSLQENLQLPFLTPAIPHGPSGGDMNGWAKPEEQTLAGGGSSGMSLCPSSELDYIAGSFWQLFATDSTIDCGDDLVKRLSGLSGKTRERLLINQDGWIKEERSWGVSSVKIITAFNGQWKKQIERGVRTNRNRVWSCAVSVVRSRKLKKPGSFSRGGTETESSILDXSSNHRAKEIGKENGCFNKETLPLKHFTEGHDLLIPNNKTHILFCSALAIQQNRVVAEEESYSYREHHDATVVLWVSHVEGCDGV 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0594 545 MobiDBLite consensus disorder prediction 175 200 - -
Lele10g0594 545 FunFam NAC domain-containing protein 100-like 23 170 - -
Lele10g0594 545 SUPERFAMILY NAC domain 6 166 IPR036093 GO:0003677|GO:0006355
Lele10g0594 545 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Lele10g0594 545 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 216 - -
Lele10g0594 545 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Lele10g0594 545 MobiDBLite consensus disorder prediction 308 336 - -
Lele10g0594 545 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0594 Lele-ChrLele10 4373687 4378591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0594 4 306 NAC Transcription Factor Family AT5G53950 62.769 2.50e-116 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele10g0594 NAM 7.6e-40 No_clan