Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0584 ATGCCTTATATGCAAGGTATGCAGAGATATCATGATACAGCTTGCAACAGAAGCAGCCTCAGGTTTGCTCGTTCTCCTCCCGATAACCACCAGTGCCATAATTATCACCTTCCAACTATGCCTATGCAAGGAGTAAGAGGCCACAATACCAACATTCACCCTCCAGTTACTGCAACTACTTATAGAGGGGTTCCGTCAAATTCTCCACACGTTAGCGTTATCCCAGTGCAGAATGGTTTTGGGTTGGGTGCTAGGCATGTTGGCCCTGCACCATCAGGAAGCCAACGGATACATCGTTCTCATAGAGGAGTCATGCCTGATACATCTCTTAGACATCACAATTCCCGTCCAATGAGTTTTCTCCACGTTGATGATGTTGCTTTACTTGACGAAGTGGAAAATTTAGTCGACCGTCGTCATGGTGATATGCGTTTGGACATAGAGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGCGAGCGGATTGGCAGCGTGAACATGGGTTTGTCGGAGGAAACCATCACAACTCAATTGAAAACAAAAACTTTCGAGTACTCCGCAACTTTTGAGTCCTCCGCCACCGCTAATCAAGAGGAGATAGCTTCTGAGGATGAGGAAACTGATTCTTGCATCATATGCCTGGACAAATATAAGAACCAAGAGACAGTTGGAATTCTCGAATGCGGGCACGATTATCACGCCGATTGCTTGAAGAAATGGTTGCTGCTGAAGAACGTCTGCCCTATATGCAAATCAGAGGCATTGTCCCCTAGAAGGAAGGACGTGTAA 789 0.4613 MPYMQGMQRYHDTACNRSSLRFARSPPDNHQCHNYHLPTMPMQGVRGHNTNIHPPVTATTYRGVPSNSPHVSVIPVQNGFGLGARHVGPAPSGSQRIHRSHRGVMPDTSLRHHNSRPMSFLHVDDVALLDEVENLVDRRHGDMRLDIEDMSYEELLALGERIGSVNMGLSEETITTQLKTKTFEYSATFESSATANQEEIASEDEETDSCIICLDKYKNQETVGILECGHDYHADCLKKWLLLKNVCPICKSEALSPRRKDV 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0584 262 Pfam Ring finger domain 208 251 IPR001841 -
Lele10g0584 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 255 IPR013083 -
Lele10g0584 262 ProSiteProfiles Zinc finger RING-type profile. 210 251 IPR001841 -
Lele10g0584 262 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 12 256 IPR045191 GO:0061630
Lele10g0584 262 SMART ring_2 210 250 IPR001841 -
Lele10g0584 262 SUPERFAMILY RING/U-box 202 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0584 Lele-ChrLele10 4304661 4306559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0584 121 255 C3H Transcription Factor Family AT2G15530 43.165 1.45e-32 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0584 10 4304661 4306559 Lele10g0584 10 4304661 4306559 ECH
Lele10g0584 10 4304661 4306559 Lele11g0649 11 6261907 6264076 hybridization
Lele10g0584 10 4304661 4306559 Lele12g0687 12 15095101 15097661 hybridization