LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele10g0580	ATGGCACAGTTACCTCCCAAAATACCGAGCATCCCACAAAATTGGCCTTCTTTTCCTCATCACAAGATGTCAGCTATGGCTAATTTCAATCCTACTAACTCTACTCAACAACAATATCATCATCAGCAACAACAGCAACAAAATTCTTCACCACCGTTATCACAAAAGTTACCTTCCTGGGTCGACGAGTTCCTCGACTTTTCATCAGCGCGACGTGGTGCTCACAGGCGGTCGGCGAACGACTCCATTGCGTTCCTCGAGGAATGCAGGAGCTCCGGCACTGTCGCGGGAGCCCATGGATTAGACAGGTTGGACGAGGAGCAGCTTATGTTGATGTTCTCCGATGACATTGCCTCCGGTGGCTTCCCTCCAGCGTTGTCGAACCCTTCCACACCGTCCGATCAAAATAGCAACAATGATGAGAAGCCAATGGTATTAGACGAAGTGGTCCCGGTTAAAGAGAATCAGCAGCCGCCGCCTCCAAAGAATAGCGAGCAAGGAGAGGTGGAGAGCTCATGCAAAACTGAAACAGCATCACCACCGTCGTCGTGCTTTGCCCCTAGCAGCGTTGAAACCATCGCGGATCCTAAAAGGGTCAAAAGAATATTGGCGAACAGACAATCAGCTCAGAGGTCAAGGGTGAGAAAGCTTCAATACATTTCCGATCTGGAGAACAGCGTGACGACATTGCAGACGGAGGTATCAGCGTTGTCGCCACGAGTAGCGTTCTTGGACCACCAACGTTTACTTCTCAACGTCGATAACAGTGCCTTGAAGCAACGCATCGCTGCTTTGGCCCAAGACAAGATTTTCAAAGATGCACATCAAGAGGCATTAAAGAAGGAAATAGAGAGACTAAGGCAAGTATATGAGCAACAGAGGCTGCAGAAGAGAGGGAACAACAGTAACAACAACATGAATGGCAATTCATTGCCCTTTGCTTCTGTTGAGGAGAAGCTCCTCAGTTGA	969	0.4881	MAQLPPKIPSIPQNWPSFPHHKMSAMANFNPTNSTQQQYHHQQQQQQNSSPPLSQKLPSWVDEFLDFSSARRGAHRRSANDSIAFLEECRSSGTVAGAHGLDRLDEEQLMLMFSDDIASGGFPPALSNPSTPSDQNSNNDEKPMVLDEVVPVKENQQPPPPKNSEQGEVESSCKTETASPPSSCFAPSSVETIADPKRVKRILANRQSAQRSRVRKLQYISDLENSVTTLQTEVSALSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYEQQRLQKRGNNSNNNMNGNSLPFASVEEKLLS	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele10g0580	322	MobiDBLite	consensus disorder prediction	295	322	-	-
	Lele10g0580	322	SUPERFAMILY	Leucine zipper domain	197	251	IPR046347	GO:0003700\|GO:0006355
	Lele10g0580	322	MobiDBLite	consensus disorder prediction	159	189	-	-
	Lele10g0580	322	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	200	215	IPR004827	GO:0003700\|GO:0006355
	Lele10g0580	322	MobiDBLite	consensus disorder prediction	295	312	-	-
	Lele10g0580	322	Pfam	bZIP transcription factor	197	241	IPR004827	GO:0003700\|GO:0006355
	Lele10g0580	322	MobiDBLite	consensus disorder prediction	153	189	-	-
	Lele10g0580	322	MobiDBLite	consensus disorder prediction	26	56	-	-
	Lele10g0580	322	Gene3D	-	196	304	-	-
	Lele10g0580	322	CDD	bZIP_plant_RF2	198	248	IPR044759	GO:0003700\|GO:0006355
	Lele10g0580	322	MobiDBLite	consensus disorder prediction	1	57	-	-
	Lele10g0580	322	FunFam	Basic leucine zipper 61	196	269	-	-
	Lele10g0580	322	Coils	Coil	272	296	-	-
	Lele10g0580	322	PANTHER	BASIC LEUCINE ZIPPER 34	1	308	-	-
	Lele10g0580	322	SMART	brlzneu	193	257	IPR004827	GO:0003700\|GO:0006355
	Lele10g0580	322	MobiDBLite	consensus disorder prediction	124	141	-	-
	Lele10g0580	322	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	195	247	IPR004827	GO:0003700\|GO:0006355
	Lele10g0580	322	MobiDBLite	consensus disorder prediction	121	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele10g0580	Lele-ChrLele10	4283174	4285243	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele10g0580	1	274	bZIP Transcription Factor Family	AT3G58120	51.935	7.40e-82	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele10g0580		bZIP_1	1.7e-09	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele10g0580	10	4283174	4285243	Lele10g0580	10	4283174	4285243	ECH
	Lele10g0580	10	4283174	4285243	Lele11g0644	11	6237047	6239021	hybridization
	Lele10g0580	10	4283174	4285243	Lele12g0692	12	15122494	15127815	hybridization