Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0577 ATGGTCGAGTTGGTAAATCATGCTGGTTCCATACAGACCACGGTAATTGAACTGGGTCCTTTCGGGACTAAACTCAACTCTAGTTCTGAGTGTTTCTCAGATGGCATGAATGTGGGACGAGCCTATCTGAGCTTCTTTCCGCGTCTTAACTCCTATCGCTTTCAACCGGAGATGATTAGCGGTGGATTATGCAATCTCCGAATGTGTTGCTTGCGTCTCTCTTGCTTCTCGGAGAAATCTCTGCTCCCACCGGCTCGGTTATCTTTCACTTGCCGCCGCCGCCACTTGGCCACCGCATCCTCGGTTTCCGGCGCCAATAAGAAGGAAACTAAAGAGAAAGTCATCGTCATTTCTGGCCCCACTGGGTCTGGTAAAAGCCGGCTTGCCTTAGAGCTCGCGAAGCGCCTCAATGGTGAAATTATCAGTGCAGATTCTGTCCAGGTATACCAGGGTCTTGATGTTGGATCAGCAAAGCCCTCCAAAAATGATAGAAAGGAGGTTCCACATCATCTGGTTGATATATTGCATCCATCTGAAGATTATTCTGTTGGGCAATTTTTTGAGGATGCAAGGGAAGCTACAAGAAGCATTCTTGACAATGGTCATGTTCCTATTGTTGTCGGGGGAACTGGATTGTACTTAAGATGGTTCATTTATGGAAAGCCTGATGTCCCCAAGGCCTCTATAGAGACTACATCTGAAGTGCATTCGGAGTTAGCTGAATTCCAGAGAAATGAGCAATGGGATGCAGCTGTGCAGTTGGTTGTAGAAGCAGGTGACCCAAAGGCCCAATTTATAACTCCCAATGATTGGTATCGATTGCGACGTAGCCTTGAAATTATTAAGTCTAGTGGATCACCTCCGTCTGCTTTTCGGGTACCATATGATTCTTTCAGGGAACAGGGAGATTCTAGTGTTATGGACAACTCTAACTATTCTGATGTCAATGCTATTTCCGATGGAATGAAAGAAACATCCTCAGATTTGGACTATGAATTCATTTGTTTTTTCCTTTCTACACGAAGGCTTGACCTCTATAGATCAGTTGATTATCGCTGCGAAGATATGCTATTGGAGAGGGATGGGCTATTGTCTGAGGCTCAATGGCTTCTTAATATTGGTCTTCATCCTAATTCAAATTCTGCAACAAAAGCAATTGGTTACAGGCAGGCCATGGACTACTTAGTAAGATGCAGACTGCAAGGGGGTCAGAGTTCAGTGCGAGAATTCTTCCATTTTTTAAATGAATTTCAAAAGGCATCTAGGAATTTTGCCAAAAGACAATTGACATGGTTTCGAAATGAACATATATACCACTGGCTTGATGCTTCTAAACCTCTGGACACCATTCTAGACTTTATCGATAGATCTTACCATGATTACAGTGGAGCTCTCGTTGTTCCTGAACACTTGAGAATGTCTAGAGATGCTTCTAACGGTCGAGAAGCCAATCAACTAAAGGCTTACCGCAGCAAAAATAGGCTTTTCTTGAATAAACATGATTGCTCTCCTGTTCTCGACCGGATAAGAAGAACTCAATGCTGA 1545 0.4388 MVELVNHAGSIQTTVIELGPFGTKLNSSSECFSDGMNVGRAYLSFFPRLNSYRFQPEMISGGLCNLRMCCLRLSCFSEKSLLPPARLSFTCRRRHLATASSVSGANKKETKEKVIVISGPTGSGKSRLALELAKRLNGEIISADSVQVYQGLDVGSAKPSKNDRKEVPHHLVDILHPSEDYSVGQFFEDAREATRSILDNGHVPIVVGGTGLYLRWFIYGKPDVPKASIETTSEVHSELAEFQRNEQWDAAVQLVVEAGDPKAQFITPNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGDSSVMDNSNYSDVNAISDGMKETSSDLDYEFICFFLSTRRLDLYRSVDYRCEDMLLERDGLLSEAQWLLNIGLHPNSNSATKAIGYRQAMDYLVRCRLQGGQSSVREFFHFLNEFQKASRNFAKRQLTWFRNEHIYHWLDASKPLDTILDFIDRSYHDYSGALVVPEHLRMSRDASNGREANQLKAYRSKNRLFLNKHDCSPVLDRIRRTQC 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0577 514 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 111 443 IPR039657 -
Lele10g0577 514 Gene3D - 111 501 IPR027417 -
Lele10g0577 514 Gene3D - 223 293 - -
Lele10g0577 514 Hamap tRNA dimethylallyltransferase [miaA]. 114 452 IPR018022 GO:0008033
Lele10g0577 514 Pfam IPP transferase 147 435 - -
Lele10g0577 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 244 IPR027417 -
Lele10g0577 514 TIGRFAM miaA: tRNA dimethylallyltransferase 114 291 IPR018022 GO:0008033
Lele10g0577 514 FunFam tRNA dimethylallyltransferase 9 222 293 - -
Lele10g0577 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 349 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0577 Lele-ChrLele10 4215285 4226751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0577 117 395 C2H2 Transcription Factor Family AT2G27760 29.167 1.54e-22 98.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0577 10 4215285 4226751 Lele10g0577 10 4215285 4226751 ECH
Lele10g0577 10 4215285 4226751 Lele11g0636 11 6155042 6165453 hybridization
Lele10g0577 10 4215285 4226751 Lele12g0697 12 15174910 15180437 hybridization