LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele10g0573	ATGTTCCATTACTTACGTCGCAGCACTGGGTTGGATTCATTGGAGCGACTGAGTTACTCTGTGATGAGTTGTTTCTCTTGTCTCATCAGAAAAAAGGGATGTGTCTCATCTACAAAACCAACTGAAATTGATCTTGAGGTTTCAGACATTCAGAATGTGAACCTTTACACCTACAAGGAACTTCGAATTGCCACGGAAGGTTTTAACCCGGCAAACAAGATAGGGCAAGGTGGTTTCGGATCTGTCTATAAGGGAAGGCTGAGAAATGGGACTCTTGCCGCTATAAAGGTTTTGTCAGCTGACTCGCATCAAGGAGTTCGGGAATTCCTGACAGAAATCAAGGTGATCACTAGCATAGAGCATGAGAACCTAGTTAAGTTGTTTGGATGCTGTGTGGAAGGAAATCACAGGATATTGGTGTATGGATATCTTGAAAACAACAGCCTAGCTCAAACACTTATTGGTGGAGGGCATAGTAGCATTCAATTCAGTTGGCCTGTGCGGAGGAACATTTGCATCGGTGTTGCGCGGGGCCTAGCATTCCTTCATGAGGAGGTTGAACCACATATTATTCATAGAGACATTAAAGCAAGCAATATACTACTTGATAAAAACCTGCAGCCCAAAATTTCTGATTTTGGTCTCGCAAAGCTTCTTTCTTCAAACCTGACTCATATTACTACACATGTTGCTGGAACAGCTGGTTATCTAGCGCCTGAGTATGCAATACGAAGTAAAGTAACAAGAAGATCAGATGTCTACAGTTTTGGAGTTCTACTATTGGAAATTATGAGTGGGAGGTGTAACACAAACAGACGGTTACCTGCTGAAGAACATTATCTTCTTCCAAAGGCATGGACTATGTATGAAAACGGGGAGCTGGAGAAACTGGTGGATGCATTGCTAGAAGACGACTTCAATGTTGAGGAGGCATGCCGGTTTTGTAAGATCGGTCTTCTCTGCACTCAGGATTCTCCTCAGCTCCGACCATCAATGTCTTCTGTGCTTGGCATGTTGAAGGGTGAAATTGATGTTGATGAAAAGAAAATTACAAAACCAGGATTACTGTTTGAGTTTGTAGAAGGGAAAGATGAAAAGATGCAAAAAGTTGAGGCTGAAGTGGAAAATACATCTTCCCTTGGCAATACAGGGAAGCAAGATGATTCCTCTTCGATAGGAACCACGACCTCTTTTGCCGCCATGACCTTCACTTCAATTTATGACCGAAGCTATTAA	1236	0.4256	MFHYLRRSTGLDSLERLSYSVMSCFSCLIRKKGCVSSTKPTEIDLEVSDIQNVNLYTYKELRIATEGFNPANKIGQGGFGSVYKGRLRNGTLAAIKVLSADSHQGVREFLTEIKVITSIEHENLVKLFGCCVEGNHRILVYGYLENNSLAQTLIGGGHSSIQFSWPVRRNICIGVARGLAFLHEEVEPHIIHRDIKASNILLDKNLQPKISDFGLAKLLSSNLTHITTHVAGTAGYLAPEYAIRSKVTRRSDVYSFGVLLLEIMSGRCNTNRRLPAEEHYLLPKAWTMYENGELEKLVDALLEDDFNVEEACRFCKIGLLCTQDSPQLRPSMSSVLGMLKGEIDVDEKKITKPGLLFEFVEGKDEKMQKVEAEVENTSSLGNTGKQDDSSSIGTTTSFAAMTFTSIYDRSY	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele10g0573	411	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	144	351	-	-
	Lele10g0573	411	Gene3D	Transferase(Phosphotransferase) domain 1	144	352	-	-
	Lele10g0573	411	ProSiteProfiles	Protein kinase domain profile.	68	343	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele10g0573	411	Pfam	Protein kinase domain	71	270	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele10g0573	411	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Lele10g0573	411	Gene3D	Phosphorylase Kinase; domain 1	39	143	-	-
	Lele10g0573	411	ProSitePatterns	Protein kinases ATP-binding region signature.	74	96	IPR017441	GO:0005524
	Lele10g0573	411	FunFam	cold-responsive protein kinase 1	39	143	-	-
	Lele10g0573	411	SUPERFAMILY	Protein kinase-like (PK-like)	47	339	IPR011009	-
	Lele10g0573	411	CDD	STKc_IRAK	74	341	-	-
	Lele10g0573	411	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	31	373	-	-
	Lele10g0573	411	SMART	serkin_6	68	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele10g0573	Lele-ChrLele10	4201822	4203899	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele10g0573	56	352	Receptor kinase-like Gene Family	AT1G53430	54.209	4.08e-104	328

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lele10g0573		Pkinase	1.9e-46	CL0016