Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0567 ATGTCGCATTCTGGGAAGTCCGATTCGGAGCTAGGGTTAGGCGCTCTTAAAGATCGATTTCAGGAGTCCTTGAGGTGCGAGGCGAACAAGCCGGATTTTCGCGAGCTCGATCTAGGGTCGCCGGTTTCGCCATTGCGGACCCGTCAGAGTGGACCTACTGCGAGTGGACTCACCACTACTACCAGCAGTAGTTCCAGTTCATCTGGATCGGTTTCTGGGCGCAATGGGTACAACCCGGTCTCTAAAAGATCCGATTCTGGTGCGAACAATCACTCCGGTGAGCTTTCTGGTTCCAGCGAGAGCAGTCCTACTGCCGCCGAGAGCCTTCGATCTGGGGGGAATGCCAGGAACTTAAAACCGGGTCACGCAAGATCCGATGCCGGCACCACCGCACCTTTAATCTATTCGGGTCAAAGCTCATCCGTCACATCACCGGCCTTGAATGTTCTTCCTACCGGCAATATCTGTCCGTCTGGCAGGATTCTGAAGACGGTCATGGCGTCTAATCGGACCTCCAGGTCGGACGTTTTGGGCTCCGGTACGGCCAATTATGGTCACGGAAGCATAATGCGGGGCGGTGGAACATCCAAACATACTGCCGTAGAGGTGGCAAGTATGGCAAATGCAAGGGTAGCCGGCGGTGGCGGTTTTAAAGAACCGTTCAAGAGAGCGGCGGCAGATTTGGATCCAGAAGAGGTAAAAAGAGCGGGGAACGAGCAGTACAAGAGGGGTAACTTTACAGAGGCATTGAATCTATACGATCGGGCAATTGGACTGTCCCCAGGTAATGCCGCCTACCGGAGCAACCGTGCGGCTGCATTGACGGCATTGGGTCGGTTGAGTGAGGCGGTGAGGGAATGTGAGGAGGCTGTGAGATTGGATTCTAATTATGGAAGAGCGCACCAGCGTCTTGCTTCTCTTTTTCTCCGGTTAGGACAAGTTGAGAATGCGAGGAAGCACCTATTTGGTCATGGGCTGCAGCCGGATCCTTCTGAGTTGCAGAAGCTGCAATCGGTGGAGAAGCATATCAACAAATGTACTGATTTTCGAAGGATAGGTGATTGGAAAAGTGTCCTCAGGGAAGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCGGAAGCCCTTTTAAAGCTCCACCGAATTGATGATGCCGAATTGATTGTGTCAGCTATTCCAAAAACAGAATCACATTCTAAATACTCGTCTCAGGCAAGGTTTTTTGGGATGCTTTCTGAAGCTTATTCTTTCTTTGTTAGAGCTCAGATTATGATGGCTTTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTGGCCTGATTGATCCCCGGAACATTGAAGTTGCTGTTTTGCTCAGCAATGTAAGGATGGCGGCTAGAGCACGAGCTCGTGGTAATGATCTTTTCAAGTCCGAAAGGTTCACTGAAGCTTGCTCTGCATATGAGGAAGGTTTAAGACTGGACCCTTCAAATGCTGTTCTCTATTGCAATAGAGCTGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAGGACTGCAATCAAGCGTTACACATTCAGCCAAATTACACAAAAGCCCTTCTTCGAAGGGCTGCCTCAAATAGCAAGCTAGCAAGGTGGGAAGAAGCAGTCAAAGATTATGAGGTCTTACGAAGAGAACTTCCAGATGACAATGAAGTTGCTGAAGCTCATTTCCATGCATACGTTGCATTGAAGAAATCTCGTGGGGAAGAAGTTTATAATTTGAAATTTGGTGGTGAAGTGGAAGGAGTATCTGGTCTTGAGCAATTTAGAGCTGCAATTTCTTTACCAGGGATTGACTGTAACCTTAACTCTGCAGGTGTATCTGTTGTCCATTTTGAAAGTGAATCTGATTCGCAATGCAAACAATTATCACCATTTGTGAATACACTTTGCAGTCGATATCCTTCGGTTAGCTTTCTCAAGGTGGATATTCAAAAAAGCCCAGCAATTGCAGCTGCTGAGAATGTTAGGTTGGTTCCAACTTTCAAGATATACAAAAATGGCAGCCGTGTGAAGGAAATTGTTTGCCCCAACCGTGATATGTTGGAACACTCTGTGAGGCATTACAGCACTTAG 2136 0.4813 MSHSGKSDSELGLGALKDRFQESLRCEANKPDFRELDLGSPVSPLRTRQSGPTASGLTTTTSSSSSSSGSVSGRNGYNPVSKRSDSGANNHSGELSGSSESSPTAAESLRSGGNARNLKPGHARSDAGTTAPLIYSGQSSSVTSPALNVLPTGNICPSGRILKTVMASNRTSRSDVLGSGTANYGHGSIMRGGGTSKHTAVEVASMANARVAGGGGFKEPFKRAAADLDPEEVKRAGNEQYKRGNFTEALNLYDRAIGLSPGNAAYRSNRAAALTALGRLSEAVRECEEAVRLDSNYGRAHQRLASLFLRLGQVENARKHLFGHGLQPDPSELQKLQSVEKHINKCTDFRRIGDWKSVLREVDAAVAAGADSSPQLFMCRAEALLKLHRIDDAELIVSAIPKTESHSKYSSQARFFGMLSEAYSFFVRAQIMMALGRFENAVTAAEKAGLIDPRNIEVAVLLSNVRMAARARARGNDLFKSERFTEACSAYEEGLRLDPSNAVLYCNRAACWFKLGQWERSIEDCNQALHIQPNYTKALLRRAASNSKLARWEEAVKDYEVLRRELPDDNEVAEAHFHAYVALKKSRGEEVYNLKFGGEVEGVSGLEQFRAAISLPGIDCNLNSAGVSVVHFESESDSQCKQLSPFVNTLCSRYPSVSFLKVDIQKSPAIAAAENVRLVPTFKIYKNGSRVKEIVCPNRDMLEHSVRHYST 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0567 711 MobiDBLite consensus disorder prediction 26 132 - -
Lele10g0567 711 CDD TRX_family 607 698 - -
Lele10g0567 711 SUPERFAMILY Thioredoxin-like 575 703 IPR036249 -
Lele10g0567 711 SUPERFAMILY TPR-like 231 339 IPR011990 GO:0005515
Lele10g0567 711 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
Lele10g0567 711 FunFam TPR repeat-containing thioredoxin TTL4 594 710 - -
Lele10g0567 711 SMART tpr_5 422 455 IPR019734 GO:0005515
Lele10g0567 711 SMART tpr_5 536 569 IPR019734 GO:0005515
Lele10g0567 711 SMART tpr_5 230 263 IPR019734 GO:0005515
Lele10g0567 711 SMART tpr_5 502 535 IPR019734 GO:0005515
Lele10g0567 711 SMART tpr_5 468 501 IPR019734 GO:0005515
Lele10g0567 711 SMART tpr_5 264 297 IPR019734 GO:0005515
Lele10g0567 711 SUPERFAMILY TPR-like 471 585 IPR011990 GO:0005515
Lele10g0567 711 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 708 IPR044534 -
Lele10g0567 711 Gene3D Glutaredoxin 604 710 - -
Lele10g0567 711 ProSiteProfiles TPR repeat profile. 502 535 IPR019734 GO:0005515
Lele10g0567 711 SUPERFAMILY TPR-like 337 466 IPR011990 GO:0005515
Lele10g0567 711 MobiDBLite consensus disorder prediction 43 111 - -
Lele10g0567 711 Pfam Tetratricopeptide repeat 502 535 IPR001440 GO:0005515
Lele10g0567 711 Pfam Thioredoxin 625 703 IPR013766 -
Lele10g0567 711 Pfam Tetratricopeptide repeat 236 296 - -
Lele10g0567 711 Gene3D Tetratricopeptide repeat domain 229 588 IPR011990 GO:0005515
Lele10g0567 711 ProSiteProfiles TPR repeat profile. 468 501 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0567 Lele-ChrLele10 4149073 4152153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0567 467 538 U-box Gene Family AT3G07370 40.278 1.09e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0567 10 4149073 4152153 Lele10g0567 10 4149073 4152153 ECH
Lele10g0567 10 4149073 4152153 Lele11g0628 11 6095125 6098243 hybridization
Lele10g0567 10 4149073 4152153 Lele12g0706 12 15250150 15253233 hybridization