Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0560 ATGCTGCCGGAGCTTCTCGGCGAGATTATACGGCGGGTGGAGGTCAGCGAGGAGCGGTGGCCCCTCCGCCAAAACGTTGTCTCCTGTGCTTGCGTCTGCAAGAGGTGGAGGGATATGACTCGTGAGATCGTTCGGTCCCCTTCTCAGAGCGGCAAAATTACTTTCCCTTCCTGCCTTAAACAGCCAGGACCACGGGATTCGCCCCACCAATGTCTTATAAAGCGGAACAAGAGGACTTCAACATTTTACCTATATCTTGCCCTTACACCATCTTTCACAGATAAAGGGAAGTTTCTCTTAGCAGCGAGGAGATATAGGCGTGGTGCTAATACCGAATATATCATATCACTTGATCCTGAAGACTTTTCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTCCTTGGTACCAACTTCACAATCTATGACAGCCAGCCACCCCATAATGGCGCGAAGCCATCAAGTAGCAGGGCGAGCCGTAGATTTACCAGCAAGCAGATAAGCCCACAAGTTCCTGCAGGTAACTTTGAGGTGGGACAAGTCTCATACAAGTTCAACATTTTGAAATCAAGGGGGCCTAGAAGGATGGCTTGCACAATGAAGTGCCCCTTTCCTTTGTTAGGAGAAAGTTCAGCAAACAAAACTCTAGACACCGCTGATAAGACGAACAATAAAGAACAAGTCGTTGCTCCTGGCTACTCGATATTGAAGAACAAAGCTCCAAGATGGCATGAGCATTTGCAATGTTGGTGCTTGAATTTCCATGGCCGCGTGACTGTGGCGTCAGTGAAGAATTTTCAGCTGGTGGCCACAGTGGATCAGAGCCTACCAGATGGAAAAGGAGACGAGGAAACAGTTCTCCTGCAGTTTGGGAAGGTTGGGGATGATACTTTCACCATGGATTATAGGCAGCCCTTATCAGCCTTCCAGGCTTTTGCCGTTTGCCTAACAAGCTTTGGCACTAAACTGGCGTGTGAGTAA 990 0.4838 MLPELLGEIIRRVEVSEERWPLRQNVVSCACVCKRWRDMTREIVRSPSQSGKITFPSCLKQPGPRDSPHQCLIKRNKRTSTFYLYLALTPSFTDKGKFLLAARRYRRGANTEYIISLDPEDFSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSRASRRFTSKQISPQVPAGNFEVGQVSYKFNILKSRGPRRMACTMKCPFPLLGESSANKTLDTADKTNNKEQVVAPGYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSLPDGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAVCLTSFGTKLACE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0560 329 PANTHER TUBBY-RELATED 8 327 - -
Lele10g0560 329 MobiDBLite consensus disorder prediction 146 169 - -
Lele10g0560 329 Pfam F-box domain 3 45 IPR001810 GO:0005515
Lele10g0560 329 Pfam Tub family 59 324 IPR000007 -
Lele10g0560 329 Gene3D Tubby Protein; Chain A 54 329 IPR025659 -
Lele10g0560 329 SUPERFAMILY Tubby C-terminal domain-like 47 329 IPR025659 -
Lele10g0560 329 ProSitePatterns Tub family signature 1. 257 270 IPR018066 -
Lele10g0560 329 PRINTS Tubby superfamily signature 239 256 IPR000007 -
Lele10g0560 329 PRINTS Tubby superfamily signature 286 305 IPR000007 -
Lele10g0560 329 PRINTS Tubby superfamily signature 307 329 IPR000007 -
Lele10g0560 329 PRINTS Tubby superfamily signature 113 129 IPR000007 -
Lele10g0560 329 PRINTS Tubby superfamily signature 257 273 IPR000007 -
Lele10g0560 329 PRINTS Tubby superfamily signature 129 153 IPR000007 -
Lele10g0560 329 PRINTS Tubby superfamily signature 178 205 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0560 Lele-ChrLele10 4089207 4092075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0560 1 329 TUB Transcription Factor Family AT1G53320 78.743 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele10g0560 Tub 1.8e-102 CL0395