Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0536 ATGGCTCTGGTCTGTGGTTCCACCTCAGGGACGTTCCCTTCAACTTCAGCCCCACGTTTTTCTTCCAACAATAGCTCAAATACTAAATCCCTGTTTCTTGGGTTCCGATTGGCATTATCGAAGTCTTCTATACGGTCCAGTGTTCCCGTCAATTCCAGGGGAAGTTTTCAGGTTCGGTGCCAGGATGTCTCCATTGTTCCTAAAGATGAACGATTTATGTTCGAGGTATCTGAAGTCAATGGCCCGGACATTTGGAACAAGACCTGGTATCCAAAAGCTGCAGATCATGTGAATACAGATAAACAATGGTACATTGTTGATGCTACAGACAAAATTCTTGGGAGATTAGCATCAACAATTGCTATTTACATCAGAGGGAAAAATCTGGCAACTTATACTCCCAGTGTGGACATGGGTGCCTTTGTAATTGTTGTGAATGCAGAAAAAGTTGCCGTGTCTGGGAAAAAGAGGACCCAAAAGCTTTATAGGAGACATTCCGGACGACCTGGTGGTATGAAAGTGGAGACATTTGCCCAACTACAGCAGAGAATTCCAGAAAGAATTATTGAGCATGCTGTTCGTGGCATGCTTCCTAAAGGAAGGCTTGGCAGACAACTATTCACCCACCTAAAGGTTTATGAGGGCCCAGATCATCCACACCAGGCCCAAAAGCCCATTGAGTTGCCGATAAGGGATAAAAGAGTACAAAAGTCGAGGTAG 720 0.4472 MALVCGSTSGTFPSTSAPRFSSNNSSNTKSLFLGFRLALSKSSIRSSVPVNSRGSFQVRCQDVSIVPKDERFMFEVSEVNGPDIWNKTWYPKAADHVNTDKQWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQQRIPERIIEHAVRGMLPKGRLGRQLFTHLKVYEGPDHPHQAQKPIELPIRDKRVQKSR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0536 239 Pfam Ribosomal protein L13 101 219 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele10g0536 239 TIGRFAM rplM_bact: ribosomal protein uL13 97 228 IPR005823 GO:0003735|GO:0005840|GO:0006412
Lele10g0536 239 MobiDBLite consensus disorder prediction 7 25 - -
Lele10g0536 239 PANTHER RIBOSOMAL PROTEIN L13 89 235 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele10g0536 239 MobiDBLite consensus disorder prediction 215 239 - -
Lele10g0536 239 Gene3D Ribosomal protein L13 92 236 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele10g0536 239 Hamap 50S ribosomal protein L13 [rplM]. 103 229 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele10g0536 239 MobiDBLite consensus disorder prediction 1 25 - -
Lele10g0536 239 FunFam 50S ribosomal protein L13 86 230 - -
Lele10g0536 239 CDD Ribosomal_L13 103 216 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele10g0536 239 SUPERFAMILY Ribosomal protein L13 97 231 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele10g0536 239 ProSitePatterns Ribosomal protein L13 signature. 193 215 IPR023563 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0536 Lele-ChrLele10 3913073 3914881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0536 105 229 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.061 3.56e-07 47.8