Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0534 ATGAAGATTCAGTGCAGCGTGTGTGAGGCTTCGGAGGCTAAGGTTTTATGTTGCGCCGACGACGCGGCTCTGTGTTGGGAATGTGACGAGAAAGTTCATGCAGCTAACAAACTTGCCGGCAAGCACCAGAGAGTGCCTTTTTCTTCCTCTGGCTCTCACATGCCCAAATGTGATATTTGTCAGGAATCTTTTGGCTATTTCTTCTGTCTAGAGGACAGGGCTTTACTCTGCAGAAAATGTGATGTGGCAATACACACAGCAAATTCCTATGTTTCCACTCATCAGAGGTTTCTGTTGGCTGGTATAAGAGTAGGACTTGAAGCTACCGAGCCCGGTGCTTCCTCGTCACAGTCACAGTCTGAGGAGAAGAGGTCAGATACGAAATCTTCTTCTGCCTCTAGAAGGGTTTCTTCAGTGCCTGAGTCATCTGAACACAATGAAGTTATACCTTCCCAAGGTGGTGGAGGAACTGGGCAGTTTCCACCTTCTAAGGGTTCTTATGGTGGCGGTTCAACTCCTGGAAACTTATCAAACTGGCCCATTGATGATTTTTTTGGTTTAAATGAATTCAGTCAGGATTACAATTGCATGGACAATGAACCATCCAAGGATGACAGTGGGAAGCCTGGGGATTGTGATTCTCCTGGTTTTAAATCCAGCGAAGAGGAAGTAGATGATGACGGCGACGGTGACGACTTGAGGCGATTTTCGGATTTATCTCGGACAGTTCCTCAGATTCCTTCACCTCCTACAGCTTCAGGATTAAATTGGCCTAAAGACACTCAATGTACACATGACAATGCTATGTTTGTTCAGGTTCCAGACGTGTGTCTTTCTGATTCACAACAGTTCAACCTTGTTCAGAATCGGCATATTCTATCAAAACGATGGAGGCATCAACCATAA 906 0.4558 MKIQCSVCEASEAKVLCCADDAALCWECDEKVHAANKLAGKHQRVPFSSSGSHMPKCDICQESFGYFFCLEDRALLCRKCDVAIHTANSYVSTHQRFLLAGIRVGLEATEPGASSSQSQSEEKRSDTKSSSASRRVSSVPESSEHNEVIPSQGGGGTGQFPPSKGSYGGGSTPGNLSNWPIDDFFGLNEFSQDYNCMDNEPSKDDSGKPGDCDSPGFKSSEEEVDDDGDGDDLRRFSDLSRTVPQIPSPPTASGLNWPKDTQCTHDNAMFVQVPDVCLSDSQQFNLVQNRHILSKRWRHQP 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0534 301 MobiDBLite consensus disorder prediction 131 178 - -
Lele10g0534 301 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele10g0534 301 MobiDBLite consensus disorder prediction 241 260 - -
Lele10g0534 301 CDD Bbox1_BBX-like 5 47 - -
Lele10g0534 301 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele10g0534 301 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lele10g0534 301 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Lele10g0534 301 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lele10g0534 301 MobiDBLite consensus disorder prediction 195 260 - -
Lele10g0534 301 MobiDBLite consensus disorder prediction 198 221 - -
Lele10g0534 301 MobiDBLite consensus disorder prediction 110 180 - -
Lele10g0534 301 Gene3D Classic Zinc Finger 1 94 - -
Lele10g0534 301 CDD Bbox1_BBX-like 56 99 - -
Lele10g0534 301 FunFam B-box zinc finger protein 22 1 93 - -
Lele10g0534 301 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0534 Lele-ChrLele10 3900225 3902288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0534 1 276 C2C2-CO-like Transcription Factor Family AT1G78600 47.403 6.70e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele10g0534 zf-B_box 1e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0534 10 3900225 3902288 Lele10g0534 10 3900225 3902288 ECH
Lele10g0534 10 3900225 3902288 Lele11g0594 11 5841625 5843987 hybridization
Lele10g0534 10 3900225 3902288 Lele12g0739 12 15524653 15526681 hybridization