Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0522 ATGGTTGCTCAACTTTGGTGGATCCAAATGAGCAAGTCTCTGGTTTTAGCCTTCTACATCACCATATGCTGCATCTCTTTTATCATTTCCAAAATCATCATCTCAGTTCTCCTCTACAGAAGATGGAAAAGAAAGCATATGACTTATGAAGAAGTTTATCCAGGTGGGAAGATGGTAATATTTAGGTGTTCAGTGCTACAATCAGTGACATCTGATATGGTTTTAAAGAAGATATTGAAACTGAGCAACAAGGACATTATTGGAAGTGGTGGTTATGGGGTAGTTTATACACTGCAAATAGATGAAGCCAAAGCTTTTGCAGTGAAAAGGCTCAACAAAGGAACTGCAGAGAGAGAGAGAGGCTTTGAGAGAGAGTTGGAAGCAATGGCAGACATAAAACACCGCAACATTGTGACTCTTCATGGTTACTATACCGCCCCTCATTACAACCTTCTCATTTATGAGCTCATGTCTAATGGAAGCTTAGATTCTTTTCTACATGGTAGGCATCACCTAGCTTTTATCCATTACTTCCTCCATCATGCCCTTATATGGGGAGATCAAAGAACAAGTTGTTTTTGGATTGGCCAACAAGAATACTTTGATACGGGCAGAGCAACTGTAAAAGGGGATGTTTACAGCTTTGGAGTTGTGTTATTGGAGCTTTTAACGGGGAAAAAACCCTGCGATGAAGCATTTATAGAGGAAGGAAGCAAGCTTGTCACATGGGTGAAGGCTGTAGTTCAAGAGAGGAAGGGGGAGTTAGTTATTGACAACACCATGGGGTCTTGTCCCATGCAAGAGGTTGACAATGTGTTCAACATTGCAATGAAGTGTCTTGAACAAGATCCTCTCAAGAGGCCAACCATGGCTGAGGGAACTTTAGACTTGGAAATGATGCACTATGATGTAGCTCTTACAAGGGGTGTAATTGGTTAG 939 0.4132 MVAQLWWIQMSKSLVLAFYITICCISFIISKIIISVLLYRRWKRKHMTYEEVYPGGKMVIFRCSVLQSVTSDMVLKKILKLSNKDIIGSGGYGVVYTLQIDEAKAFAVKRLNKGTAERERGFERELEAMADIKHRNIVTLHGYYTAPHYNLLIYELMSNGSLDSFLHGRHHLAFIHYFLHHALIWGDQRTSCFWIGQQEYFDTGRATVKGDVYSFGVVLLELLTGKKPCDEAFIEEGSKLVTWVKAVVQERKGELVIDNTMGSCPMQEVDNVFNIAMKCLEQDPLKRPTMAEGTLDLEMMHYDVALTRGVIG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0522 312 SMART serkin_6 81 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele10g0522 312 SUPERFAMILY Protein kinase-like (PK-like) 66 303 IPR011009 -
Lele10g0522 312 Pfam Protein kinase domain 83 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele10g0522 312 Pfam Protein tyrosine and serine/threonine kinase 189 292 IPR001245 GO:0004672|GO:0006468
Lele10g0522 312 Gene3D Transferase(Phosphotransferase) domain 1 188 305 - -
Lele10g0522 312 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 16 177 - -
Lele10g0522 312 FunFam Receptor-like serine/threonine-protein kinase 52 156 - -
Lele10g0522 312 Gene3D Transferase(Phosphotransferase) domain 1 65 185 - -
Lele10g0522 312 ProSitePatterns Protein kinases ATP-binding region signature. 87 109 IPR017441 GO:0005524
Lele10g0522 312 ProSiteProfiles Protein kinase domain profile. 81 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0522 Lele-ChrLele10 3776751 3779876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0522 51 290 Receptor kinase-like Gene Family AT2G35620 32.990 1.30e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Lele10g0522 PK_Tyr_Ser-Thr 3e-10 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0522 10 3776751 3779876 Lele11g0582 11 5728751 5735183 hybridization
Lele10g0522 10 3776751 3779876 Lele12g0755 12 15640694 15644044 hybridization