Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0520 ATGCAATCACACCCCTCTCACACTGGTAACGGCGGAAGGAGCGGCGGATCCAGATTGCGGTTAACGTATGGCGAATTCGCTATTGGAGGCAATAGTTTCGGTTTTGTGAGTGGTCCCAAGTTGCAGGTTTATAGATTGATATTGAAGCTCGAAGGCCACAGGGAGAGAATGGGGCTGCTGAGTTCTATAGCACAATGGAGAGGAATTATGAAGGAACTGGTGGATCGTACGGCGATTACAGTGAAGTTTCTCTGCCTCCTCCACGTTACCAACAACTATCTTTGCTCCCCTACTCACGTGTACGGGCCTAGTATGCTCCCCACCTTGAATCTCACCGGTGATGTGGTGCTTGTCGAGCATGTGTCTCCTCGACTGGGGAAGCTTGGGCCTGGAGATTTGGTGCTCGTTCGCTCTCCCTTAAACCCTAATCGGACTTTGACCAAGCGCATTGTGGGCTTGGAAGGGGATAGGATCACTTACTTTGATCCTAGGCACGGTGATGTACCTCAAAATGCTGTGGTGCCAATGGGGCATGTTTGGATTCAGGGGGATAACATCTATGCCTCCCGTGATTCACGGCATTTTGGTCCTATTCCATATGGTCTTATACAAGGAAAAGTGTTTTTTAGGGTTTGGCCACCTGATAGTTTTGGACGGCTGGATTATTAA 669 0.4933 MQSHPSHTGNGGRSGGSRLRLTYGEFAIGGNSFGFVSGPKLQVYRLILKLEGHRERMGLLSSIAQWRGIMKELVDRTAITVKFLCLLHVTNNYLCSPTHVYGPSMLPTLNLTGDVVLVEHVSPRLGKLGPGDLVLVRSPLNPNRTLTKRIVGLEGDRITYFDPRHGDVPQNAVVPMGHVWIQGDNIYASRDSRHFGPIPYGLIQGKVFFRVWPPDSFGRLDY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0520 222 CDD S26_SPase_I 96 207 IPR019533 GO:0004252|GO:0006465
Lele10g0520 222 Gene3D Umud Fragment, subunit A 90 219 - -
Lele10g0520 222 PRINTS Bacterial leader peptidase 1 (S26A) family signature 174 193 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele10g0520 222 PRINTS Bacterial leader peptidase 1 (S26A) family signature 93 109 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele10g0520 222 PRINTS Bacterial leader peptidase 1 (S26A) family signature 146 158 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele10g0520 222 FunFam Inner membrane protease subunit 1 91 219 - -
Lele10g0520 222 Pfam Signal peptidase, peptidase S26 78 161 IPR019533 GO:0004252|GO:0006465
Lele10g0520 222 Pfam Signal peptidase, peptidase S26 170 212 IPR019533 GO:0004252|GO:0006465
Lele10g0520 222 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 65 220 - -
Lele10g0520 222 SUPERFAMILY LexA/Signal peptidase 93 220 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0520 Lele-ChrLele10 3764984 3766766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0520 105 220 MADS-box Gene Family AT1G29960 53.846 3.23e-38 127