Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0501 ATGGAGATTACTAATGTGAGTGAGTATGAGGCAATTGCAAAGCAGAAATTGCCAAAGATGGTGTTTGATTACTATGCATCTGGTGCTGAGGACCAGTGGACTCTTGCAGAGAACAGAAATGCCTTTTCCAGAATCCTGTTCCGGCCACGTATTCTCATCGATGTCAGCAAGATAGACATGACCACCACTGTCCTGGGCTTCAAAATTTCCATGCCGATCATGATTGCTCCAACAGCCATGCAGAAAATGGCTCATCCTGAGGGAGAATATGCAACTGCAAGAGCTGCATCAGCTGCTGGAACAATCATGACTTTGTCCTCATGGGCTACTTCAAGTGTCGAAGAGGTTGCCTCGACAGGACCTGGAATCCGCTTTTTCCAGCTATATGTGTACAAGGACAGGAATGTTGTTGCTCAGCTTGTGAGAAGAGCTGAAAGGGCTGGCTTCAAAGCCATTGCTCTCACTGTTGACACCCCAAGGCTTGGTCGCAGAGAAGCTGACATAAAGAATAGATTCACCTTGCCACCATTCTTGACATTGAAGAACTTCGAAGGTTTGGACCTCGGAAAGATGGACATGGCTGAGGACTCTGGACTTGCTAGTTATGTTGCTGGCCAAATTGATCGTACTCTGAGCTGGAAGGATGTGAAGTGGCTGCAAACAATCACTCAGCTTCCAATTCTGGTGAAGGGTGTTCTGACTGCTGAGGACACAAGGCTTGCAATTCAGGCAGGAGCAGCTGGAATTATTGTTTCCAACCATGGAGCCAGACAGCTTGATTATGTGCCTGCCACTATAATGGCTTTAGAAGAGGTTGTGAAAGCTGCTCAAGGTCGTGTTCCAGTGCTCTTGGATGGTGGCGTTCGTCGTGGAACTGATGTTTTCAAGGCCTTAGCCCTGGGAGCCTCTGGCATATTTATTGGACGTCCAGTGGTGTTCTCACTGGCAGCAGAGGGAGAAGCTGGGATTAGGAAGGTGCTGCAGATGCTGCGTGATGAGTTTGAGCTAACCATGGCCTTGAGTGGATGCCGCTCCCTCAAGGAAATCACTCGCGAGCATATCGTCACCGAGTGGGACCGCCCTCATCATCTTCCTCCTCTTGCCCTCCCCAGATTATGA 1119 0.4906 MEITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDMAEDSGLASYVAGQIDRTLSWKDVKWLQTITQLPILVKGVLTAEDTRLAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVLLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGIRKVLQMLRDEFELTMALSGCRSLKEITREHIVTEWDRPHHLPPLALPRL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0501 372 ProSitePatterns FMN-dependent alpha-hydroxy acid dehydrogenases active site. 252 258 IPR008259 GO:0016491
Lele10g0501 372 CDD alpha_hydroxyacid_oxid_FMN 7 351 IPR012133 GO:0010181|GO:0016491
Lele10g0501 372 ProSiteProfiles FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. 1 359 IPR037396 -
Lele10g0501 372 PIRSF Al-hdrx_acd_dh 1 359 IPR012133 GO:0010181|GO:0016491
Lele10g0501 372 Gene3D Aldolase class I 1 367 IPR013785 -
Lele10g0501 372 SUPERFAMILY FMN-linked oxidoreductases 2 356 - -
Lele10g0501 372 Pfam FMN-dependent dehydrogenase 13 355 IPR000262 GO:0016491
Lele10g0501 372 PANTHER S -2-HYDROXY-ACID OXIDASE-RELATED 2 361 - -
Lele10g0501 372 FunFam peroxisomal (S)-2-hydroxy-acid oxidase GLO1 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0501 Lele-ChrLele10 3549529 3553443 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0542 09 4047518 4052092 Lele10g0501 10 3549529 3553443 ECH
Lele10g0501 10 3549529 3553443 Lele10g0501 10 3549529 3553443 ECH
Lele10g0501 10 3549529 3553443 Lele11g0549 11 5399320 5403845 hybridization
Lele10g0501 10 3549529 3553443 Lele12g0778 12 15891203 15895037 hybridization