Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0497 ATGATTGACCAGGAGCTGGTCATATGTGTAGTTTATGTGAGGTTGAATGTACTGAGCACAGCGCTAGACACCGAAGGAGCGCAAACAAACCAAGAAAAAAACGCCCCAGAGAGCGATGCGCGTGCGGTGGTCGTGGTGGCTTTGCTACTGCTGCTCAGGGTTTATCTCTCCGACGACGACGGCGTCCAATGCACCGGAGCACGCGGCCGAAGGTCGTCGTCGTTGATGGCCTTGCAATTGCACATGACTTGGCTGCCGAGTCTTCTCACTCAGAAGCGCAAGACCGATCACCCTGTGGGCCTCAGGAACCTCGGCAACTCTTGCTACCTCAACAGCGTCCTCCAGTGTCTCACCTACACTCCTCCTCTTGCCAATTTCTGTCTTCGAAACCAGCACTCTTCCCTTTGCGACTCTGCTTCGGAGGAAAGGAAGCGGGAGTGCCCTTTTTGTCTACTAGAGAAACGGATTGTTCGTTCTTTGAGAGTGGATCTCGCCCAAGACGCTCCGTTGAAGATCCAGAACTGTCTCAGGATTTTTGCCGAGCACTTTCGTTGTGGTCGTCAGGAGGATGCTCACGAGTTCCTGAGGTACGTTATCGATGCCTGCCACAACACCTGCCTTCGCCTCAAGAAGTTGAGGCGCAAGGGGGGCGATGCGGCTGTCAATGGTAACGGCAACAATACCGTGGTTAAGGAGATATTTGGGGGAGCCTTGCAGAGCCAGGTGAAGTGTATCTCTTGTGGCTATGAGTCGAATAAGGTGGATGAGATTATGGATATCAGTCTTGATGTTTTGCATAGCAATTCGCTTAAAGATGCTATGCAAAAGTTCTTTCAGCCTGAGATTTTAGATGGGAATAATAAGTACAAATGTGACAATTGCAAGAAATTGGTGGCGGCTAAGAAACAAATGTCTATACTTGAAGCCCCTAATGTCCTCGTAATACAACTTAAGAGATTTGAGGGCATATTGGGTGGGAAGATCGACAAGGCTGTTGCATTTGAAGACATTTTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAGGATCCGATGCCAGAATATAGGCTCTTTGGTATCATTGTCCATTCTGGATACTCCCCAGAATCTGGCCATTATTATGCTTATATAAAGGATGCAAAGGGCCGGTGGTATTGCTGTGATGATTCTTCTGTCTCACTTGCTACCCTGAAAGAAGTTTTGTCAGAAAAGGTTTACATGCTTTTTTTTTCTCGCACTAACCAAAGGTCAGTGCCAATTAGAAATGGTTTTGCTTCAAACGGTTCAAGGTCTCATGACTATCATCACAATAATGGAAGTCGGGCATCTGAATGTCCAAAATCTGATGCACCACCAAAAGTAGTGCATGCAAAATTGAGTTCTCAACAATCTTCTTGGAAGGACATGTCTGCCATGTCCAAGACTGGTAAAGAGCCTTCTAGCCCACGAGTGAAGTTTAATTTTAATGGAAATCCTACTTGCAAAAGAGGCCATGAAAGTATCAATGGGAAAGTTGATGTCCCGTTGAACCAGCCTGTAGTAAGTAATGGACATGTGAAAAACTCAGTTGCTTTAGAGAATGCTAAGAAAGATTCTTCATCAGTCAGGAATGGTTTTGAAAAAAATAAAGTAGACGCTGTTGACAACTTAAAAAGGAAGGATTCGGTGTTAACAAATAAAAACACTGGTATTCAATCTGTTGAAAAATATCCTAGAAAGTTAGATCTTATAGATGACTCTGGGAGAAGCAGAGCAATATCAGGTAAAGGACCTGACAACTATAAGCTAGAAGGCAATGGTGTCATCAACAAACCTAAATCATTGGAGAATAAGAGGAAGGAACCAGTGGGTACCAGCATTTTGCTTGCGCATGATAGTCAGTCTGAAGCAAGAGTTCAGGAACTGAAAGACATGCTTAAAAAAGAGGCAAAGTCAGTCTTAAGATCATGTGGTTGGACAGATAAGGTGTATGACTATATGTCTTCTAGAAAGAGGTTACGCGCACAAGAAGCTGGAAATTCATCAAGTGAAGATGAGATAAAGAAGTTGCTAATAAGTGAGGCTAAGGGAGCTTTCATATCACAGATCCCTGAGTCATTGAAAGAGGATCTGATTGGTCGTCTCCAATTATTTAGCAAAGAAAAGAAAGGAAGTGGAAGACCGTGA 2166 0.4446 MIDQELVICVVYVRLNVLSTALDTEGAQTNQEKNAPESDARAVVVVALLLLLRVYLSDDDGVQCTGARGRRSSSLMALQLHMTWLPSLLTQKRKTDHPVGLRNLGNSCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASEERKRECPFCLLEKRIVRSLRVDLAQDAPLKIQNCLRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGDAAVNGNGNNTVVKEIFGGALQSQVKCISCGYESNKVDEIMDISLDVLHSNSLKDAMQKFFQPEILDGNNKYKCDNCKKLVAAKKQMSILEAPNVLVIQLKRFEGILGGKIDKAVAFEDILVLSSFMCKASQDPMPEYRLFGIIVHSGYSPESGHYYAYIKDAKGRWYCCDDSSVSLATLKEVLSEKVYMLFFSRTNQRSVPIRNGFASNGSRSHDYHHNNGSRASECPKSDAPPKVVHAKLSSQQSSWKDMSAMSKTGKEPSSPRVKFNFNGNPTCKRGHESINGKVDVPLNQPVVSNGHVKNSVALENAKKDSSSVRNGFEKNKVDAVDNLKRKDSVLTNKNTGIQSVEKYPRKLDLIDDSGRSRAISGKGPDNYKLEGNGVINKPKSLENKRKEPVGTSILLAHDSQSEARVQELKDMLKKEAKSVLRSCGWTDKVYDYMSSRKRLRAQEAGNSSSEDEIKKLLISEAKGAFISQIPESLKEDLIGRLQLFSKEKKGSGRP 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0497 721 MobiDBLite consensus disorder prediction 582 605 - -
Lele10g0497 721 Pfam Ubiquitin carboxyl-terminal hydrolase 99 410 IPR001394 GO:0004843|GO:0016579
Lele10g0497 721 Gene3D Cysteine proteinases 92 415 - -
Lele10g0497 721 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 100 115 IPR018200 GO:0004843|GO:0006511
Lele10g0497 721 CDD Peptidase_C19E 98 411 - -
Lele10g0497 721 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 99 413 IPR028889 -
Lele10g0497 721 MobiDBLite consensus disorder prediction 457 485 - -
Lele10g0497 721 MobiDBLite consensus disorder prediction 423 485 - -
Lele10g0497 721 FunFam Ubiquitin carboxyl-terminal hydrolase 25 93 415 - -
Lele10g0497 721 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 66 415 - -
Lele10g0497 721 SUPERFAMILY Cysteine proteinases 92 412 IPR038765 -
Lele10g0497 721 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 355 373 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0497 Lele-ChrLele10 3530183 3536187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0497 98 422 Miscellaneous Gene Families AT2G24640 37.273 3.42e-61 212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0497 10 3530183 3536187 Lele10g0497 10 3530183 3536187 ECH
Lele10g0497 10 3530183 3536187 Lele11g0546 11 5380361 5384811 hybridization
Lele10g0497 10 3530183 3536187 Lele12g0784 12 15907983 15912335 hybridization