Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0496 ATGGCTTCCTTCCAGAACTTGAACTTAGAAACCCAGATCCCTGAAGACGTTCTTATTGCTCAAATCATGCAGCTTCATGCAAGCATATCAAAGCTTGAATCCCTTAAGCCTTCAAAGCAAGTGAACACTCTCTTCACTCACCTTGTCAATCTCTGCACACTTCCTTCTCCCATTAACATTCAAGCTTTGCCCCAAGAAGTGAAGAACATGAGAGAGAGTCTCATTAACCTCTGTGGCCAAGCTGAAGGCCTTTTAGAGCTACAATTCTCATCTTTTCTTGCCCAAATTCCCAAACCTTTGAACAACCTCAATCTCTTCCCATATTATGGGAACTACGTTAAACTAGCAAACCTAGAAAGCAAAATCCTCAGAGACAATGGGGTGGTTCATCCCAAGAAGGTAGCTTTTGTGGGGTCTGGTCCAATGCCACTAACTTCCCTCATAATGGCCACACACCACTTGGTTTCCACACACTTTGATAACTTCGACATCGACGAGAAAGCCAACGAGGCAGCCCATAGGATCGTTGGTACGGATTCAGAGCTCGAGAAGAGGATGAAGTTTGAGACAAAAGATATCATGGAAGTGAAAGAAAGGTTGGGGGAATATGACTGTATATTCTTAGCAGCTCTTGTGGGAATGAGCAGAGAAGAAAAAGTGAAGATTTTGGGATATTTGGGTAAGTATATGAAGGAAGGAGGGTTTTTGCTTGTGAGAAGTGCAAAAGGGCCAAGGGCATTCTTGTACCCTATTGTGGAGGAACATGACTTGGTCAATTTTGAGGTTCTTACAATATTTCATCCCACAAATGATGTCATCAACTCTGTTCTTCTTCTTCGCAAGCCTATGGCTTAG 855 0.4304 MASFQNLNLETQIPEDVLIAQIMQLHASISKLESLKPSKQVNTLFTHLVNLCTLPSPINIQALPQEVKNMRESLINLCGQAEGLLELQFSSFLAQIPKPLNNLNLFPYYGNYVKLANLESKILRDNGVVHPKKVAFVGSGPMPLTSLIMATHHLVSTHFDNFDIDEKANEAAHRIVGTDSELEKRMKFETKDIMEVKERLGEYDCIFLAALVGMSREEKVKILGYLGKYMKEGGFLLVRSAKGPRAFLYPIVEEHDLVNFEVLTIFHPTNDVINSVLLLRKPMA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0496 284 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 242 IPR029063 -
Lele10g0496 284 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410|GO:0030418
Lele10g0496 284 Gene3D Vaccinia Virus protein VP39 17 282 IPR029063 -
Lele10g0496 284 PANTHER NICOTIANAMINE SYNTHASE 3 14 282 IPR004298 GO:0030410|GO:0030418
Lele10g0496 284 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 11 284 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0496 Lele-ChrLele10 3527207 3528061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0496 16 281 Nicotianamine Synthase Gene Family AT5G56080 53.333 4.81e-95 281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0496 10 3527207 3528061 Lele11g0545 11 5376303 5376734 hybridization
Lele10g0496 10 3527207 3528061 Lele12g0785 12 15914421 15915275 hybridization