Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0486 ATGCATATAATGGTGGGCAACGCTCAAGGAGCAATGGCTTATCTTGCTTCCCCTGTCAGTTTGGGAGGTCTAGTTGGAGTGAGTTCCTCTGGGAGGACTCAGTCTAGTGGAAGGAGAGTTTCTCTTTCTGGAGGAAACTTTAAAGGTAGAAGGACATGGCCTTGTGTCTCCTTGTCACTTTGTAGATATTCGGTGACTACGACTGATTTCATACCGGACCAAGGCAATGCAGTGTCCCTTGACTCTAACAGTGAAAGAGTAAGTACGGGTACTGGAGATAATAATGCTAGTTTTGTCCTTAAGCCACCTCCAAAGCCAGTATTGAAGTCTTCAGAGATCAAGGGTAACTCCATTTTAGGTGCAAGTTCCGAAGGATGGGATCCCTCCAAAGATAAGCAATTTGGTAATGAAAAGTTAGATGATGTTGAAGAGAGGAATAAGGTGATTGAGTCACTTGGAGAGGTGTTGGAGAAGGCTGAAAAGCTGGAAAATTCAAAGTTTGAGGGCAAAAGAAATAATGGGCCAGTGAGCAAATCAGCAGTATCTAATACAACCACTAATCCTAAGACTGATAAATTGGCAAACTCAACAACAAACCAGCTGTCTAGAACTGTGAAGAGCGTATGGCGTAAAGGGGACACAGTTGCTAATGTGCAGAAGGTTGCTAAGGAAGCACCCAAGCCTAAAACTAAGAATGGAGGAGGGAGATCTCAAACAGGAAGCGGAGGAAAGGTGGCATTTCAGTCACCTACTCCTCCACGAGCTCCTCAGCCACCATCTAGACCTCAGCCTTTGTTACAAGCTAAGCCATCTGTAGCTCCCCCACCCATCAAAAAACCTATTCTGAAGGACAATGGAGCTGCTGGAACATCTGTTAAAGATAAAGAAAGGAAAGGGCCAATTTTGATTGACAAGTTTGCTAGCAAGAAACCAGTAGTTGATCCTCTAATTGCTCAAGCTGTTCTAGCTCCTACAAAACCAGGAAAGGGCCCTCCTCCTGGAAAGTTTAAAGATGATTACCGAAAGAAAGGTTCTCCAACTGGAGGACCAAGGAGAAGAGTATTAAATGATGATGTCGAGCCCGATGAGGATACATCAGAACTTGATGTATCTATTCCTGGTGCTGCAACAGCAAGAAAAGGGAGGAAGTGGAGTAAAGCAAGTAGAAAGGCAGCAAGACTTCAGGCTGCCAAGGAGGCAGCTCCTGTCAAAGTAGAAATTCTAGAGGTCAGTGATAAAGGTATGCTGATAGAGGAGTTAGCCTACAACTTGGCAATCAGTGAAGGTGAAATCCTGGGTTATCTATACTCCAAGGGGATTAAACCAGATGGGGTGCAAACTCTAGACAAAGATATGGTGAAGATGATTTGTAGAGAGCAAGGTGTGGAAGTCATAGATGCCGATCCTATTAGAGTTGAAGGATTGGTGAAGAAAAGGGAAATTCTAGATGAAGATGATCTCGACAAACTCAAATATAGGCCTCCTGTTATTACTATCATGGGTCATGTGGATCATGGCAAGACAACTCTTTTGGACCATATTCGGAAGAGCAAGGTGGCTGCTTCTGAAGCCGGTGGTATTACACAAGGAATCGGGGCATATAAAGTTCAAGTTCCTGTTGATGGAAAATTTCTGCCTTGTGTTTTTCTTGACACACCTGGGCATGAGGCATTTGGGGCTATGAGAGCTCGAGGAGCAAGTGTAACAGATATTGCTATTGTTGTCGTGGCTGCTGATGATGGAATTCGTCCTCAAACAAATGAAGCCATTGCTCATGCCAAAGCAGCAGGAGTACCCATAATTATCGCTATAAACAAGATAGATAAAGATGGAGCAAATCCTGACCGAGTCATGCAAGAGCTATCTTCAATTGGTCTAATGCCTGAAGACTGGGGTGGTGACATCCCAATTGTTCAGATAAGCGCTCTTAAAGGGGAGAATGTAGATGATCTTTTGGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCAAATCCTGATAGAAGTGCGAAGGGCACAGTCATTGAGGCTGGTCTGGATAAATCAAAAGGACCATTTGCTACTTTTATCATGCAGAATGGTACCCTTAAAAGGGGAGACGTAGTAGTTTGCGGAGAAGCTTTTGGGAAGGTGCGGGCTTTATTTGATGATGTTGGAAAACGTGTTGATTCAGCTGCACCCTCTATACCTGTCCAGGTTATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGTGGTTGTTAACTCCCTTGATGCTGCCCGTGAAAAGGCAGAGTCCCGCGCTGAATCATTGAGACATGAGCGTATTTCAGCTAAAGCAGGGGATGGGAAGGTCACCCTTTCTTCTTTAGCTTCTGCAGTTGCGTCAGGAAAGCTTTCTGGATTAGACTTGCACCAACTAAACATTATCTTGAAGGTTGACCTTCAGGGATCCATTGAAGCTATCAGACAAGCCCTACAGGTGCTACCACAAGATAATGTCACCTTGAAGTTTTTGTTGGAAGCAACTGGTGATGTTAGCACCAGTGATGTTGACCTTGCAGTTGCAAGCAAAGCTATTATTTTGGGATTTAATGTCAGAGTACCGGGTTCTGTAAAAAGCCACGCAGAAAATAAGTTGGTGGAGATTAGATCATATAAAGTTATTTATGACCTAATTGATGATGTGCGGAATGCAATGGAAGGACTTCTGGAGCCTGTGGAGGAACAAGTAACTATTGGCTCAGCTGAAGTAAGGGCCACGTTCAGCAGCGGTAGCGGCCGTGTTGCTGGATGCATGGTTAATGAGGGAAAAGTAACGAAAGAATGTGGCATTCGAGTCATCCGTAAGGGAAAGGTTGTTCACGTTGGAGTGCTTGATTCTTTGAGACGAGTAAAGGAGAGTGTGAAAGAGATGAGTGCTGGTCTAGAGTGTGGAATTGGTTTAGAAGATTACGACCACTGGGAAGAGGGAGATATTATCGAGGCACTCAACACGGTTCAGAAGAAGCGGACCCTTGAAGAGGCATCGGCTTCAATGGCTGCCGCAGTGGAAGAAGTAGGAGTAGAGTTTTAG 3066 0.4439 MHIMVGNAQGAMAYLASPVSLGGLVGVSSSGRTQSSGRRVSLSGGNFKGRRTWPCVSLSLCRYSVTTTDFIPDQGNAVSLDSNSERVSTGTGDNNASFVLKPPPKPVLKSSEIKGNSILGASSEGWDPSKDKQFGNEKLDDVEERNKVIESLGEVLEKAEKLENSKFEGKRNNGPVSKSAVSNTTTNPKTDKLANSTTNQLSRTVKSVWRKGDTVANVQKVAKEAPKPKTKNGGGRSQTGSGGKVAFQSPTPPRAPQPPSRPQPLLQAKPSVAPPPIKKPILKDNGAAGTSVKDKERKGPILIDKFASKKPVVDPLIAQAVLAPTKPGKGPPPGKFKDDYRKKGSPTGGPRRRVLNDDVEPDEDTSELDVSIPGAATARKGRKWSKASRKAARLQAAKEAAPVKVEILEVSDKGMLIEELAYNLAISEGEILGYLYSKGIKPDGVQTLDKDMVKMICREQGVEVIDADPIRVEGLVKKREILDEDDLDKLKYRPPVITIMGHVDHGKTTLLDHIRKSKVAASEAGGITQGIGAYKVQVPVDGKFLPCVFLDTPGHEAFGAMRARGASVTDIAIVVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPDRVMQELSSIGLMPEDWGGDIPIVQISALKGENVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIMQNGTLKRGDVVVCGEAFGKVRALFDDVGKRVDSAAPSIPVQVIGLNNVPIAGDEFVVVNSLDAAREKAESRAESLRHERISAKAGDGKVTLSSLASAVASGKLSGLDLHQLNIILKVDLQGSIEAIRQALQVLPQDNVTLKFLLEATGDVSTSDVDLAVASKAIILGFNVRVPGSVKSHAENKLVEIRSYKVIYDLIDDVRNAMEGLLEPVEEQVTIGSAEVRATFSSGSGRVAGCMVNEGKVTKECGIRVIRKGKVVHVGVLDSLRRVKESVKEMSAGLECGIGLEDYDHWEEGDIIEALNTVQKKRTLEEASASMAAAVEEVGVEF 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0486 1021 Gene3D Translation factors 668 784 - -
Lele10g0486 1021 Gene3D Translation factors 906 1002 - -
Lele10g0486 1021 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 799 911 IPR036925 -
Lele10g0486 1021 TIGRFAM small_GTP: small GTP-binding protein domain 495 655 IPR005225 GO:0005525
Lele10g0486 1021 Pfam Elongation factor Tu GTP binding domain 497 657 IPR000795 GO:0003924|GO:0005525
Lele10g0486 1021 Gene3D - 800 905 IPR036925 -
Lele10g0486 1021 MobiDBLite consensus disorder prediction 170 207 - -
Lele10g0486 1021 CDD IF2_eIF5B 495 661 - -
Lele10g0486 1021 MobiDBLite consensus disorder prediction 332 346 - -
Lele10g0486 1021 SUPERFAMILY Translation proteins 907 1001 IPR009000 -
Lele10g0486 1021 SUPERFAMILY Translation proteins 668 752 IPR009000 -
Lele10g0486 1021 FunFam Translation initiation factor IF-2 489 667 - -
Lele10g0486 1021 MobiDBLite consensus disorder prediction 323 368 - -
Lele10g0486 1021 FunFam Translation initiation factor IF-2 800 905 - -
Lele10g0486 1021 PRINTS GTP-binding elongation factor signature 496 509 IPR000795 GO:0003924|GO:0005525
Lele10g0486 1021 PRINTS GTP-binding elongation factor signature 564 575 IPR000795 GO:0003924|GO:0005525
Lele10g0486 1021 PRINTS GTP-binding elongation factor signature 600 609 IPR000795 GO:0003924|GO:0005525
Lele10g0486 1021 PRINTS GTP-binding elongation factor signature 548 558 IPR000795 GO:0003924|GO:0005525
Lele10g0486 1021 MobiDBLite consensus disorder prediction 166 308 - -
Lele10g0486 1021 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 192 1009 IPR015760 -
Lele10g0486 1021 Gene3D - 489 667 IPR027417 -
Lele10g0486 1021 Hamap Translation initiation factor IF-2 [infB]. 7 1001 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lele10g0486 1021 Pfam Translation-initiation factor 2 800 893 IPR023115 -
Lele10g0486 1021 ProSitePatterns Initiation factor 2 signature. 954 976 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lele10g0486 1021 Coils Coil 751 771 - -
Lele10g0486 1021 FunFam Translation initiation factor IF-2 905 1002 - -
Lele10g0486 1021 FunFam Translation initiation factor IF-2 668 786 - -
Lele10g0486 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 668 IPR027417 -
Lele10g0486 1021 MobiDBLite consensus disorder prediction 232 246 - -
Lele10g0486 1021 MobiDBLite consensus disorder prediction 289 304 - -
Lele10g0486 1021 MobiDBLite consensus disorder prediction 251 277 - -
Lele10g0486 1021 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 492 665 IPR000795 GO:0003924|GO:0005525
Lele10g0486 1021 MobiDBLite consensus disorder prediction 81 96 - -
Lele10g0486 1021 CDD mtIF2_IVc 911 993 - -
Lele10g0486 1021 CDD IF2_mtIF2_II 672 766 IPR044145 -
Lele10g0486 1021 MobiDBLite consensus disorder prediction 81 111 - -
Lele10g0486 1021 TIGRFAM IF-2: translation initiation factor IF-2 414 1003 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0486 Lele-ChrLele10 3460819 3467419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0486 474 891 Eukaryotic Initiation Factors Gene Family AT1G76810 29.184 6.76e-29 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0486 10 3460819 3467419 Lele10g0486 10 3460819 3467419 ECH
Lele10g0486 10 3460819 3467419 Lele11g0527 11 5219898 5230934 hybridization
Lele10g0486 10 3460819 3467419 Lele12g0794 12 15990318 15996928 hybridization