Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0477 ATGAGCAGCATAAGCGTGGTAGAGGCAAAGTTGCCTCCTGGGTTCAGGTTTCATCCCAGAGATGAAGAACTTGTATGTGATTACTTAATGAAGAAGGTGACGCACTGTGACTCCTCTCTCATGATTGATGTTGATCTTAACAAGTGCGAACCATGGGACATTCCGGAGGCAGCATGTGTAGGAGGGAAGGAGTGTTATTTCTACACACAGCGAGACCGCAAGTATGCGACTGGCCTACGCACCAATCGTGCCACTGCCTCAGGCTATTGGAAGGCCACAGGGAAGGACAGGCCTATTCTTCGCAAGGGCACCCTTGTTGGTATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGACAAAGACCGAATGGGTCATGCATGAGTTTCGCCTTGAAGGTCCCCTTGGTCCTCCTAAATTTTCTTCAGCCAAGGAGGATTGGGTTCTGTGCAGGGCGTTCCTCAAAAACAGAGAATCTTCAGCGAAACAGAGCATCAGAAGCTGCTACGACGACACAGGATCTTCATCTCTACCTGCATTAATGGATTCTTACATCAGTTTCGACCAACAGGCTCAAGCTCAAACTCATCAAGATGACTACGAGCAAGTGCCCTGCTTCTCCATTTTCTCGCAGATCCATACAAACCCTAACCTCAACCACACAATCAGTACAAGCATCATGGAGCCAAATTTAGTAGTACCTGTCAAGAACCACAATGTGACCACCGCATACGGCGGAGGAACGGCGCCGTACGATCTGGATTCTTCTTGCTTGGATCCTAATTTGAATTTCGACGGTGATAGTAGGAAGGTGTTAAGAGCTTTCGTGGATCAACTCACTAAGATTGAGAGAAATCAACAAAGCCAAATTACTACTCTAGAAGGTTCACCAAGCTTAGGGGAAGCAAGTTCTGAGAGTTTTTTATCTGATGTGTGTATGCCCAACTCGTGGAACAATTTCGGATTGATTCACACTCAATCTCGTAATTGGTCTTAA 1005 0.4677 MSSISVVEAKLPPGFRFHPRDEELVCDYLMKKVTHCDSSLMIDVDLNKCEPWDIPEAACVGGKECYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGTKTEWVMHEFRLEGPLGPPKFSSAKEDWVLCRAFLKNRESSAKQSIRSCYDDTGSSSLPALMDSYISFDQQAQAQTHQDDYEQVPCFSIFSQIHTNPNLNHTISTSIMEPNLVVPVKNHNVTTAYGGGTAPYDLDSSCLDPNLNFDGDSRKVLRAFVDQLTKIERNQQSQITTLEGSPSLGEASSESFLSDVCMPNSWNNFGLIHTQSRNWS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0477 334 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Lele10g0477 334 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 215 - -
Lele10g0477 334 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Lele10g0477 334 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Lele10g0477 334 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0477 Lele-ChrLele10 3379246 3383285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0477 2 321 NAC Transcription Factor Family AT1G56010 57.100 8.00e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele10g0477 NAM 6.4e-35 No_clan