Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0470 ATGACTATTTCTTCCAATGATGCTGTTTTTACTCTGCCCAATTGGAGAGCAGGGAAGAGTGATCCTAAAAGTAAGGAGCTCAGGCTTAATGATGCATTTCTGTATTTAGAGTATATGGTGGGTAAAGGTCACAAATCAGATGTAGCTCAAGCAACCCAGCTTTTGTATGATCTTTGCAAGGCTAATAAGCTGAGGAAAGCTGTTAGAATGATGGAGATGATGATAGGTTCAGCTGCTTATAAGGAGAGGGGAGTTGATGAAGCCAGGAAACTTTTAGATGAGATAATTGCCAAAGGTGGGGAGAGTAATTTGATTAGTTACAATGTTATATTAACTGGATTGTGCAAGGAAGGTAGAACTGAAGAAGCCTTTAAGCTGTTCAGGGAATGGCCTGAGAAGGGGTTTCATCTAGTGTTGTGA 420 0.4048 MTISSNDAVFTLPNWRAGKSDPKSKELRLNDAFLYLEYMVGKGHKSDVAQATQLLYDLCKANKLRKAVRMMEMMIGSAAYKERGVDEARKLLDEIIAKGGESNLISYNVILTGLCKEGRTEEAFKLFREWPEKGFHLVL 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0470 139 Pfam PPR repeat 98 130 IPR002885 -
Lele10g0470 139 SUPERFAMILY HCP-like 33 132 - -
Lele10g0470 139 Pfam PPR repeat 58 76 IPR002885 -
Lele10g0470 139 Gene3D Tetratricopeptide repeat domain 9 137 IPR011990 GO:0005515
Lele10g0470 139 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Lele10g0470 139 TIGRFAM PPR: pentatricopeptide repeat domain 105 136 IPR002885 -
Lele10g0470 139 PANTHER ATPASE EXPRESSION PROTEIN 3 25 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0470 Lele-ChrLele10 3336091 3336755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0470 39 136 Glycosyltransferase AT1G05670 33.036 1.02e-11 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0470 10 3336091 3336755 Lele10g0470 10 3336091 3336755 ECH
Lele10g0470 10 3336091 3336755 Lele11g0514 11 5105602 5107308 hybridization
Lele10g0470 10 3336091 3336755 Lele12g0808 12 16130806 16134446 hybridization