Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0457 ATGGCGAAACCTGGGCGAGGCCGTCGCTCACCGCCTTCGGGTTCCATCTCGGGCTCATCATCGCGCTCTAAGTCTTCTTCTCCCTCCGATTCCCGCTCCAGCTCTCGTTCCCGCTCCAGATCCTTCTCCTCGTCCTCTTCTCCATCCCGCAGTGTCAGTTCCGGGAGCCGAAGTCCACCTCCTCCAAGGAGGAAACGTCCTGCTGAAGCAGCTAGGGGAGGTAGAACTCCTCCTCCCCAATCTAAAAGGATATCTCCACCCCCCAGGAAACCTTCTCCTGTTCGTGAATCACTTGTTCTTCACATAGATAAACTCAGCAGGAACGTCCATGAAGGCCATTTGAAAGAAATATTTAGTAACTTTGGTGAGGTTGTAAACGTGGAGTTGGCAATGGATCGAACTGTTAATCTTCCTAAAGGATATGGATATGTGGAATTCAAGACAAGAGGGGATGCTGAAAAAGCCTTACTATACATGGATGGTGCCCAGATAGATGGCAATATTGTTAAGGCCAGATTTACCTTACCGCCAAGGCAGAAGGTTTCACCACCCTCAAAGGCTCCTGCTCTTGCTCCAAAGAGAGATGCTCCTAGAGCTGATAATGCTAGTGCAGATGCTGAAAAAGATGGGCCAAAGAGGCAAAGAGAATCAGCTTCTCCTAGGAGAAGACCTCCTTCACCACGAAGGAGATCTCCCATGCCTCGAAGAGTTGGATCACCAAGGCGGCCAGATTCTCCAGTTCATCGTCGAATGGACTCACCCTATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCTGTCTCCCCTGCAAAAGGCAGATCTCCAACTCCACCAAGGCGCCTTAGATCCCCTGCAAGAAGGATGCGTGGAAGTCCAATTCGCAGGCGTTCTCCTCCTCCTCCAAGGCGCCGTTCACCACCTAGACGAGCTCGTAGTCCTAGAAGGTCTCCAATCAGTCGGAGACGTATTCGCTCTCCGCCTAGGAGGTCTGCACGCTCACGATCAAGATCATTCTCGCCCCCACCTCGGAGAGGACGGCCGCCTATGAGACGTGGAAGGTCATCATCATCCTACTCTGATTCACCAAGTCCTCGCAAGGTATCCCGGAGATCAAGGAGTCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGAAGTAGCAACAGCAGCAGCAGCAGCTCACCACCCCCAGCTCGCAGACCGTAG 1203 0.5312 MAKPGRGRRSPPSGSISGSSSRSKSSSPSDSRSSSRSRSRSFSSSSSPSRSVSSGSRSPPPPRRKRPAEAARGGRTPPPQSKRISPPPRKPSPVRESLVLHIDKLSRNVHEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPPSKAPALAPKRDAPRADNASADAEKDGPKRQRESASPRRRPPSPRRRSPMPRRVGSPRRPDSPVHRRMDSPYRRGDTPPRRRPVSPAKGRSPTPPRRLRSPARRMRGSPIRRRSPPPPRRRSPPRRARSPRRSPISRRRIRSPPRRSARSRSRSFSPPPRRGRPPMRRGRSSSSYSDSPSPRKVSRRSRSRSPRRPLRGRGSSNSSSSSSPPPARRP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0457 400 MobiDBLite consensus disorder prediction 380 400 - -
Lele10g0457 400 Gene3D - 14 183 IPR012677 -
Lele10g0457 400 SMART rrm1_1 99 172 IPR000504 GO:0003723
Lele10g0457 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Lele10g0457 400 MobiDBLite consensus disorder prediction 12 58 - -
Lele10g0457 400 MobiDBLite consensus disorder prediction 175 400 - -
Lele10g0457 400 SUPERFAMILY RNA-binding domain, RBD 85 182 IPR035979 GO:0003676
Lele10g0457 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 168 IPR000504 GO:0003723
Lele10g0457 400 CDD RRM_RNPS1 100 172 IPR034201 -
Lele10g0457 400 MobiDBLite consensus disorder prediction 198 223 - -
Lele10g0457 400 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 256 - -
Lele10g0457 400 FunFam Serine/arginine-rich splicing factor SR45 3 183 - -
Lele10g0457 400 MobiDBLite consensus disorder prediction 280 331 - -
Lele10g0457 400 MobiDBLite consensus disorder prediction 241 266 - -
Lele10g0457 400 MobiDBLite consensus disorder prediction 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0457 Lele-ChrLele10 3266108 3270648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0457 100 173 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 1.93e-07 51.2