LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele10g0425	ATGGCATCTTCTCTTCTCACTCGGATGTTTTTGGGTCCTCGCCTCATTCATTCTTCGAGGCCCCAAATACTCACTTCTTTCTTCAATAAGAGCTCATTTCCTTCACAAGCCGTCCCAGCCTATACTGCTCAAAAAACAAGAACTGGTTGGGCTCATTTTGTCATGGCTTCTTCCTCCATTGGAACAAGAACTTCTTACTCGACAGTGTCTGCATCTACAGATGATCCTGTTGTTTCTGTGGATTGGCTCTATGCTAATCTTAAGAAGCCTGATTTGAAGGTGTTGGATGCCTCCTGGTACATGCCAGATGAACAGAGGAACCCAATTCAAGAATATCAGGTTGCTCACATTCCCGGGGCCCTTTTCTTTGATGTAGATGGAATATCAGACCAATCTTCAAATCTACCACACATGTTGCCATCAGAAGAAGCTTTTGCTGCTGCTGCTTCTGCTCTTGGCATAGAGAATAAAGATGGATTGGTTGTTTATGATGGAAAAGGAATATTTAGTGCAGCTCGTGTATGGTGGATGTTCCGAGTTTTTGGGCATGACAGAGTTTGGGTATTAGATGGTGGTCTGCCAAGATGGCGTGCGTCAGGATATGACGTTGAATCAAGTGCTTCTGGTGATGCTATATTGAAGGCTAGTGCTGCAAGTGAGGCCATAGAGAAAGTATACAAGGGACAAGCAGTTGGGCCAATCACATATAAGACTAAAGTTCAGCCACATCTTGTTTGGACAATGGAGCAGGTCAAGAAAAATATTGAGGAAAAAAGTCACCAACATATAGATGCTCGATCAAAGACCAGGTTTGATGGAGCTGTGCCAGAACCCCGTAAGGGTATTAAAGGTGGTCATGTACCTGGCAGCAAGTGCATTCATTTTAGCCAGGTGCTGGATGCTTCACAAACATTGCTACCAGCAGATCAGCTTAAGAAGCGATTTGATGAAGAAGGAATCTCTTTGGAAAATCCAATAGTGGCTTCTTGCGGTACTGGAGTAACTGCTTGCATTCTTGCATTGGGTCTGCATCGTCTTGGAAAATCTGATGTTCCAATCTATGATGGATCTTGGACTGAATGGGGAGCACAATCTGATACACCAGTTGAAACTTCTGAAATGCAATAA	1128	0.4371	MASSLLTRMFLGPRLIHSSRPQILTSFFNKSSFPSQAVPAYTAQKTRTGWAHFVMASSSIGTRTSYSTVSASTDDPVVSVDWLYANLKKPDLKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDVDGISDQSSNLPHMLPSEEAFAAAASALGIENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYKGQAVGPITYKTKVQPHLVWTMEQVKKNIEEKSHQHIDARSKTRFDGAVPEPRKGIKGGHVPGSKCIHFSQVLDASQTLLPADQLKKRFDEEGISLENPIVASCGTGVTACILALGLHRLGKSDVPIYDGSWTEWGAQSDTPVETSEMQ	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele10g0425	375	CDD	TST_Repeat_2	247	363	-	-
	Lele10g0425	375	PANTHER	THIOSULFATE SULFERTANSFERASE	73	373	IPR045078	GO:0016783
	Lele10g0425	375	ProSitePatterns	Rhodanese C-terminal signature.	351	361	IPR001307	GO:0004792
	Lele10g0425	375	Pfam	Rhodanese-like domain	248	363	IPR001763	-
	Lele10g0425	375	Pfam	Rhodanese-like domain	79	198	IPR001763	-
	Lele10g0425	375	SUPERFAMILY	Rhodanese/Cell cycle control phosphatase	249	373	IPR036873	-
	Lele10g0425	375	FunFam	Sulfurtransferase	70	212	-	-
	Lele10g0425	375	Gene3D	-	69	211	IPR036873	-
	Lele10g0425	375	ProSitePatterns	Rhodanese signature 1.	112	123	IPR001307	GO:0004792
	Lele10g0425	375	SUPERFAMILY	Rhodanese/Cell cycle control phosphatase	74	206	IPR036873	-
	Lele10g0425	375	SMART	rhod_4	78	202	IPR001763	-
	Lele10g0425	375	SMART	rhod_4	246	367	IPR001763	-
	Lele10g0425	375	ProSiteProfiles	Rhodanese domain profile.	256	370	IPR001763	-
	Lele10g0425	375	FunFam	Sulfurtransferase	241	372	-	-
	Lele10g0425	375	Gene3D	-	242	372	IPR036873	-
	Lele10g0425	375	CDD	TST_Repeat_1	77	200	-	-
	Lele10g0425	375	Coils	Coil	248	268	-	-
	Lele10g0425	375	ProSiteProfiles	Rhodanese domain profile.	88	205	IPR001763	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele10g0425	Lele-ChrLele10	2992303	2998050	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele10g0425	55	373	Sulfurtransferasese or Rhodanese	AT1G79230	77.116	0.0	540

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele10g0425	10	2992303	2998050	Lele10g0425	10	2992303	2998050	ECH
	Lele10g0425	10	2992303	2998050	Lele11g0450	11	4427516	4437529	hybridization
	Lele10g0425	10	2992303	2998050	Lele12g0852	12	16462619	16468589	hybridization