Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0424 ATGTCGTTAGTGAGATTCTGGTCAGGTTCAATCGCAATTCAGAAACCCCGAACAATATTTTCGTTTGGATTCTTCGATCCTTCTCAACGATGCACTTCACACGAGCTCCAGGAATTTCTGTTCTTGCCTGAAGCTGAATCAGCAAAATGGAGCACGTTTCCAATCTTCTTCTTCTTCTTCGCTCCCCAGACATCTCCCCTTTCTGGAATGGAGGATGCTTTGATGGGCTATCTCTTTGGCAAGAAGAGGGCAACGGACGTTGCTCATATGGTATGGAGACATGTTGTCCAGAAAGGGGATACAGTTGTTGATGCCACTTGTGGTAATGGTTATGACACCTTATCATTGCTCAATTTGGTTGCTGATGATTCACATAAGAAACAACATATCAAGCTCTTCAACATCTGCCATAGTAAAATGGAGGAAGTTATTCCAAGCCACGCCTCTGTTAGGGAAGAATTGGAAAGTATTGAAGCTTTTGCAGCTAGACCGTCTTCTGAGAATTGGATCTGCTGTTTATTTTATTGCTTTCTTGTCCATCGAGAAATAACATTAATGGCGATTCCTCTAAGCACGACTTACTTCAACTGGGAAACCTCTTTGCAAACCATGACGAACGATCCAGAACTGATGAGCAGTTACTACAGTTCCTTCTTCCATGAAGAAACACCACCACCACCACCAGCAGATTATTATTCAGATCATGAAACCTTCTTCTTCCTTAATAATAATAATCCAAACAGTTCATTGTTTGATTATTTTTACTCCTCACCAGAATTAACCTACCTTCCTCCTCAATATCAAACACCATCACTGCTACTCTCTGATCATAACATTAACATGTTCCCCAGTGATGATCAGAGCTTCCAATATCCCTACCCTAATAAGCGCCAGAAGTTAAGCTTTGAAGATAATTATCAGTTACCATATTGTAATGATAATTATTTCTGTGATGGGTTTGAAGATAATTATTATCCTTACTACTGTTCTTCATTAATGCCTGAGTTTAATGATATTGGAGGAGTTCCACCGCTGCAGCTTCCGGTGGTTCCGGAGAGTGAGGTGAAAGAGGTGGCGGGGGCTGAGAAGACAGTGTCGGCGCAAAGCGTGGCGGCGAGAGAAAGGAGGAAGAAGATAGCGGAGAAGACACAGGAGCTGGGGAAGATGGTGCCAGGTGGGAATAAGATGAACACAGCTGAGATGCTTCTTGCAGCTTCAAAGTATGTAAAGTACTTGCAAGCTCAAGTTTCCATGCTTCAGCTTATGAACACACTCACGGAAGAAAAAGAATCAACTTCAAGGGATAACCAAGATGAGCAATTACAAGCAATGCTTGGCAGTGCTAGTGTTGAAGAGAAGCTCTACTTGCAGGAAAAGTGCTTGGTCCCACAACACTTAGTCACCACCTTGACAAATCATTCTGATATCCAAACAAAAACTTCCATTCTCAAAGATCTTAATCAGCTCAACATTGTCACAGACACTGATCTGAAGAAGAAACAGCTCCAATAA 1512 0.4206 MSLVRFWSGSIAIQKPRTIFSFGFFDPSQRCTSHELQEFLFLPEAESAKWSTFPIFFFFFAPQTSPLSGMEDALMGYLFGKKRATDVAHMVWRHVVQKGDTVVDATCGNGYDTLSLLNLVADDSHKKQHIKLFNICHSKMEEVIPSHASVREELESIEAFAARPSSENWICCLFYCFLVHREITLMAIPLSTTYFNWETSLQTMTNDPELMSSYYSSFFHEETPPPPPADYYSDHETFFFLNNNNPNSSLFDYFYSSPELTYLPPQYQTPSLLLSDHNINMFPSDDQSFQYPYPNKRQKLSFEDNYQLPYCNDNYFCDGFEDNYYPYYCSSLMPEFNDIGGVPPLQLPVVPESEVKEVAGAEKTVSAQSVAARERRKKIAEKTQELGKMVPGGNKMNTAEMLLAASKYVKYLQAQVSMLQLMNTLTEEKESTSRDNQDEQLQAMLGSASVEEKLYLQEKCLVPQHLVTTLTNHSDIQTKTSILKDLNQLNIVTDTDLKKKQLQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0424 503 Gene3D - 362 438 IPR036638 GO:0046983
Lele10g0424 503 Coils Coil 422 442 - -
Lele10g0424 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 425 IPR036638 GO:0046983
Lele10g0424 503 Gene3D Vaccinia Virus protein VP39 78 126 IPR029063 -
Lele10g0424 503 Pfam Helix-loop-helix DNA-binding domain 371 413 IPR011598 GO:0046983
Lele10g0424 503 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 63 126 IPR010719 -
Lele10g0424 503 SMART finulus 369 418 IPR011598 GO:0046983
Lele10g0424 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 412 IPR011598 GO:0046983
Lele10g0424 503 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 86 122 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0424 Lele-ChrLele10 2983822 2991784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0424 362 489 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 46.875 4.29e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele10g0424 HLH 1.2e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0424 10 2983822 2991784 Lele10g0424 10 2983822 2991784 ECH
Lele10g0424 10 2983822 2991784 Lele11g0448 11 4419315 4421550 hybridization
Lele10g0424 10 2983822 2991784 Lele12g0855 12 16474852 16475477 hybridization