Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0419 ATGGATCAGTCAGAGCAGGCACAACAACAGCAGTTGCAAAAGCATGGGGTTGCAACTGGCCCTGGCCAGATGGCCTATTCTACTCACTACCAGACTGCTCCCATGGTAGCTTCTGGAACACCTGCCATAGCTGTACCTTCCTCAGCACAGCCTCCGGCCGCCTTCTCGAATCCCCCTCATCAAATTGCATACCAGCAAGCACATCATTTCCACCATCAGCAGCAGCAGCAGCAGCTTCAGATTTTTTGGGCTAACCAAATGCAAGAAATCGAGCAAACAACTGACTTCAAGAATCATAGTCTTCCACTCGCTAGGATAAAAAAGATAATGAAAGCTGATGAGGATGTCCGGATGATTTCAGCAGAGGCCCCAGTGATATTTGCAAAAGCATGTGAAATGTTTATCCTGGAGTTGACTCTGCGATCATGGATCCACACGGAAGAAAACAAGAGGAGAACGCTACAGAAGAATGACATAGTGGCAGCTATTTCGAGGACTGACGTATTTGATTTCTTGGTTGACATTATCCCAAGAGATGAGTTGAAAGAAGAGGGACTTGGATTAACAAAAGCTACAATTCCAGTTGTGGGTTCCCCAGCTGATATGCCCTATTATTATGTCCCACAACAGCATCCTGTAGGACCTACTGGGATGATCATGGGAAAACCGGTTGACCAGGCAGCGCTATATGCTAACCAACAGCCTCGACCTCCTCATATGGCTTTCATGCCATGGCCCCAAACACAACCTCCAGAACAGCCGCCACCTGATCAGCAACAAACAGACAGGGAAAATCTCCAGAGTCCTTGGACGATGGCCATGGAGTCACCATTCAAGCCAGATGTATTGAAGGGCAAGGTTGCTCTTATCACAGGAGGAGGCTCTGGAATTGGATTCGAAATTTCCACGCAATTCGGCAAACATGGTGCCTCCGTTGCCATCATGGGTCGACGCAAGCAAATTCTCGACTCTGCTGTCTCTGCTCTTGAATCGCTTGGAATACCGGCTATTGGATTTGAGGGGGATGTTCGCAAGCAAGAGGATGCAACAAGAGTTATGGAATCAACCTACAAGCATTTTGGAAGGATTGACATTCTTGTGAATGCTGCAGCAGGAAACTTTCTAGTGTCAGCAGAGGATCTATCTCCTAATGGATTTCGAACAGTTATGGATATTGATTCTGTTGGAACATTTACAATGTGCCATGAAGCACTAAAGTATCTCAAGAAAGGAGGACTAGGAAGGAGCTCTTCTGGTGGGGGTACAATACTAAACATTAGTGCTACCCTACATTATACAGCTTCTTGGTATCAAATTCATGTGTCTGCAGCTAAGGCGGCTGTTGATGCCACTACAAGAAACTTGGCACTAGAGTGGGGAACTGATTATGATGTTAGAGTTAATGGGATTGCACCTGGTCCAATAGGTGACACTCCTGGCATGAGTAAACTGGTTCCTCAAGAAATAAATAGCAAAGCCAGAGATTACATGCCTTTGTATAGACTTGGGGAGAAATGGGATATTGCCATGGCTGCTCTCTACCTTGTATCAGATGCAGGAAAATTCGTGAATGGCAACATAGTGATAGTAGATGGAGGACTTTGGCTGAGCAGGCCTCGTCATTTACCAAAAGAGGCAGTGAAGCAAGTTTCACGACTAGTTGAGAAAAGGTCAAGAGACGTACCAGTTGGTGTTCCAAGGAGCAAGATGTGA 1713 0.4618 MDQSEQAQQQQLQKHGVATGPGQMAYSTHYQTAPMVASGTPAIAVPSSAQPPAAFSNPPHQIAYQQAHHFHHQQQQQQLQIFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIVAAISRTDVFDFLVDIIPRDELKEEGLGLTKATIPVVGSPADMPYYYVPQQHPVGPTGMIMGKPVDQAALYANQQPRPPHMAFMPWPQTQPPEQPPPDQQQTDRENLQSPWTMAMESPFKPDVLKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQILDSAVSALESLGIPAIGFEGDVRKQEDATRVMESTYKHFGRIDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKGGLGRSSSGGGTILNISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGTDYDVRVNGIAPGPIGDTPGMSKLVPQEINSKARDYMPLYRLGEKWDIAMAALYLVSDAGKFVNGNIVIVDGGLWLSRPRHLPKEAVKQVSRLVEKRSRDVPVGVPRSKM 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0419 570 FunFam Short-chain dehydrogenase reductase 272 539 - -
Lele10g0419 570 FunFam Nuclear transcription factor Y subunit gamma 66 178 - -
Lele10g0419 570 MobiDBLite consensus disorder prediction 239 257 - -
Lele10g0419 570 SUPERFAMILY Histone-fold 70 172 IPR009072 GO:0046982
Lele10g0419 570 Pfam Enoyl-(Acyl carrier protein) reductase 295 534 - -
Lele10g0419 570 Pfam Core histone H2A/H2B/H3/H4 68 163 IPR007125 GO:0003677
Lele10g0419 570 PANTHER PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE 259 558 IPR045017 GO:0008670|GO:0009062
Lele10g0419 570 CDD TER_DECR_SDR_a 283 536 - -
Lele10g0419 570 MobiDBLite consensus disorder prediction 1 24 - -
Lele10g0419 570 MobiDBLite consensus disorder prediction 236 265 - -
Lele10g0419 570 Gene3D - 268 559 - -
Lele10g0419 570 MobiDBLite consensus disorder prediction 1 17 - -
Lele10g0419 570 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 284 536 IPR036291 -
Lele10g0419 570 PRINTS Glucose/ribitol dehydrogenase family signature 463 480 IPR002347 -
Lele10g0419 570 PRINTS Glucose/ribitol dehydrogenase family signature 287 304 IPR002347 -
Lele10g0419 570 PRINTS Glucose/ribitol dehydrogenase family signature 415 431 IPR002347 -
Lele10g0419 570 PRINTS Glucose/ribitol dehydrogenase family signature 361 372 IPR002347 -
Lele10g0419 570 PRINTS Glucose/ribitol dehydrogenase family signature 441 460 IPR002347 -
Lele10g0419 570 PRINTS Glucose/ribitol dehydrogenase family signature 498 518 IPR002347 -
Lele10g0419 570 Gene3D Histone, subunit A 62 178 IPR009072 GO:0046982
Lele10g0419 570 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 421 429 IPR002347 -
Lele10g0419 570 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 361 372 IPR002347 -
Lele10g0419 570 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 441 460 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0419 Lele-ChrLele10 2946380 2951885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0419 274 570 Acyl Lipid Metabolism Gene Families AT3G12800 79.530 2.80e-165 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele10g0419 adh_short_C2 2.6e-48 CL0063