Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0398 ATGGCACCGATGAGTCTCCCACCTGGTTTTCGGTTCCATCCAACAGATGAAGAACTCGTTGCTTATTACTTGGAAAGAAAAATCACAGGCCGTTCTATAGAGCTTGAAATCATCCCTGAAGTTGATCTTTACAAATGCGAACCATGGGATTTGCCAGATAAGTCGTTCTTGCCAAGTAAGGATATGGAGTGGTACTTTTACAGTCCAAGAGATAGAAAGTATCCAAATGGGTCAAGAACAAACAGAGCAACAAGAGCTGGATACTGGAAAGCCACAGGCAAAGATAGAGCAGTTCACTCTCAGAAACGCCAAGTAGGGATGAAGAAGACGTTGGTTTATTACAGAGGAAGGGCCCCACATGGCATTAGAACCAACTGGGTCATGCATGAGTATCGTCTCACTGATTCACTCCCTCCTCCTCCTTCTTCCTCCTTCTCCTTGAAGGATTCTTATTCATTGTGTCGTGTTTTCAAGAAGACGATCCAAATCCCAAAACCAAAAGAAGATCAGGAGGAAGAAGAAACAGAAATTACTGCCAGTAAGAATAATAAGGGATCAAAATCTGACATGAGGGTTCCATCTGAAGAACAAGGATTAAGAGAGGATTCAAGCGGCTTCGAGGTTTCTAGAGAAATGGAGATTGCTGATGAGAAAACTATCGTCAATAATAATAATAATAATCATGATGGTGCTGACAATTCTCATAGTAAATTTCCAGCTGGTGATAATGCTGCTTCATCTTCGGATCTCACTCAAGGGACCCCCACTACTGATAATGATTTTCAAGCCCAAATTGCTTCCGATGAAGCAAATAGTGCTGCTAATCCTTATTCCCTTGGAATTGACTATTCATCAAATCTATTTCAGGAAATGGAGCTACAAATGTATGCTGGCATGCACTATCAACTTCCATATCCACCATTGGAGCTTGAAGATTTCCCTCAAACAAGTTTTGTGGAGACGAAGCCATTAACGAAGCCAGCAGATCAGCAAATGATGATGATGATGAATGAATGCAATATGGGGTATGATCACAACAAATACAAGAGCTGTAGTACAATGAGTGGGACTCTAGAAGAGATAATCTCCTTGTGTTCGTCGTCTCATCATCAAGACAATAATAACTCTTTGCCTCTCTCTATGCTAGATTGA 1152 0.4123 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELEIIPEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVHSQKRQVGMKKTLVYYRGRAPHGIRTNWVMHEYRLTDSLPPPPSSSFSLKDSYSLCRVFKKTIQIPKPKEDQEEEETEITASKNNKGSKSDMRVPSEEQGLREDSSGFEVSREMEIADEKTIVNNNNNNHDGADNSHSKFPAGDNAASSSDLTQGTPTTDNDFQAQIASDEANSAANPYSLGIDYSSNLFQEMELQMYAGMHYQLPYPPLELEDFPQTSFVETKPLTKPADQQMMMMMNECNMGYDHNKYKSCSTMSGTLEEIISLCSSSHHQDNNNSLPLSMLD 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0398 383 MobiDBLite consensus disorder prediction 221 258 - -
Lele10g0398 383 Gene3D NAC domain 15 162 IPR036093 GO:0003677|GO:0006355
Lele10g0398 383 MobiDBLite consensus disorder prediction 164 180 - -
Lele10g0398 383 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Lele10g0398 383 MobiDBLite consensus disorder prediction 164 208 - -
Lele10g0398 383 MobiDBLite consensus disorder prediction 188 208 - -
Lele10g0398 383 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 235 - -
Lele10g0398 383 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Lele10g0398 383 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Lele10g0398 383 FunFam Nac domain-containing protein 86 15 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0398 Lele-ChrLele10 2725390 2729229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0398 1 363 NAC Transcription Factor Family AT1G54330 50.275 1.46e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele10g0398 NAM 6.8e-40 No_clan