Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0382 ATGGCAGCCAGTTCTACCACAACTGCCGCTCCGCCGCGTCAGCTCTCCCAGAAGGAGGCTGACATCCAAATGATGTTAGCCGCGGAGGTTCATCTTGGGACCAAAAATTGTAACTTTCAAATGGAGCGATACGTCTTCAAGCGCCGTAACGATGGTATTTACATAATCAACCTTGGGAAGACTTGGGAAAAGCTTCAGCTTGCTGCTAGGGTTATTGTTGCCATAGAGAACCCTCAGGATATTATAGTTCAGTCTGCCAGGCCTTATGGTCAGAGAGCAGTTCTTAAGTTTGCCCAATACACAGGTGCCCATGCACTTGCTGGAAGGCACACTCCTGGTACATTCACTAACCAGCTCCAGACATCCTACAGCGAACCTCGCCTTCTCATTCTGACTGATCCAAGAACAGACCATCAGCCCATTAAGGAAGCTGCACTTGGAAATATCCCAACAATTGCTTTCTGTGACACTGATTCTCCCATGAGATATGTTGACATCGGTATTCCTGCCAACAATAAGGGAAAGCACAGCATAGGTTGTCTCTTTTGGCTATTGGCAAGGATGGTTCTGCAGATGAGGGGCACTATTCGTCCAGGGCTTAAGTGGGATGTGATGGTGGATCTATTCTTCTACAGAGAACCTGAGGAGACCAAGCAACAAGAGGAAGATGAAGCACCTGCTGCTCCAGAATATGCTATCACAGACTTAACTGCTCCTGGCATTGCTACTGTTGACCAGTGGCCTGCTGCTACTGATCAGACCTGGACGCCTGATACAGTTCAACAACCTATTGCTGCAGCTCCTGGTGTCAATTGGGCTGCAGATGCTGCTGGAGAATGGGGTGAAACTGTGCAAGCTCCCCAAGCTCCCGCCCCACAAATTCATACCGCCGGAATTGAGAATGTGCCTGCCACCGGCTGGGATTAA 927 0.4941 MAASSTTTAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEETKQQEEDEAPAAPEYAITDLTAPGIATVDQWPAATDQTWTPDTVQQPIAAAPGVNWAADAAGEWGETVQAPQAPAPQIHTAGIENVPATGWD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0382 308 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lele10g0382 308 Gene3D - 21 227 - -
Lele10g0382 308 FunFam 40S ribosomal protein SA 21 227 - -
Lele10g0382 308 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele10g0382 308 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lele10g0382 308 Pfam Ribosomal protein S2 123 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele10g0382 308 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele10g0382 308 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele10g0382 308 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele10g0382 308 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele10g0382 308 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele10g0382 308 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele10g0382 308 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele10g0382 308 Hamap 40S ribosomal protein SA [rps-0]. 9 275 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lele10g0382 308 PANTHER 40S RIBOSOMAL PROTEIN SA 12 290 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lele10g0382 308 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Lele10g0382 308 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0382 Lele-ChrLele10 2583089 2585379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0382 1 308 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 70.323 1.21e-153 429