Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0357 ATGGAGCTTGATTTGAACGAGGAGCCCTTGGACCAAACCCCAACTTCAGTGATTGGATTTGATTCTATATTGGACGAGCTAGAATCAACGCATGAACATATAGAAGAGCGCATTAGGCATCTTGAAGCGGTAACCCTGAGAGCTAGGCAGCGTCAGAGGTGGCGATGGGGTCATGATTCGGTTCAAATAAATAACGTTATCACAGATATGATGATGACACCTAGTGCTCATGATGAACACAGGATGCCCCAAGAAGATGTTGGTGTCGCAGTCCCGGAAGGAACAGTTGTATTAGCGGAATTGACAACTACTAACGCTCAAAATGAAGGTAGCTTGCCTAGGGAAGAGGCTGGTGTAGACCAAGAAAGAACAGTCAACAATAGGAAAACGTGCAAAAGGAACAGTTCCCATTTAGTAGCTAAAGCATTGGGCATGGATCCATATATAGATGATGCAGTGAGCAACACTGGGAATTTTTTTGATTGTAATATCTGTCTGGACATGGCAAGGGATCCAATTTTGACATGCTGTGGTCACCTATTCTGTTGGCCATGCTTCTATCAGATGTCATATGCTTATTCAAATGTAAGGGAGTGCCCTATTTGTAAGGGAGAGGTTGCTGAAACAGGCATTATTCCGATATATGGAAATAAAGATGACTCTAGCAACCGTCAGTTGGAACTGAAAGAAAGTGGTTTCACTATCCCTCCTCGGCCCCAAGCACGTAGAATTGAGAGTCTCAGACAACAGCTCATAAGCAGGGGAGCATCATCTTCTACAATCCATGGGATTAGGCAATTTATTGGTTCAACTGCAACTGATAGAACTCGTTTTTCTGTCAACCAACCTCACCATTCGCAGCCCCAAGCATTACATGGCTAG 882 0.441 MELDLNEEPLDQTPTSVIGFDSILDELESTHEHIEERIRHLEAVTLRARQRQRWRWGHDSVQINNVITDMMMTPSAHDEHRMPQEDVGVAVPEGTVVLAELTTTNAQNEGSLPREEAGVDQERTVNNRKTCKRNSSHLVAKALGMDPYIDDAVSNTGNFFDCNICLDMARDPILTCCGHLFCWPCFYQMSYAYSNVRECPICKGEVAETGIIPIYGNKDDSSNRQLELKESGFTIPPRPQARRIESLRQQLISRGASSSTIHGIRQFIGSTATDRTRFSVNQPHHSQPQALHG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0357 293 Pfam zinc-RING finger domain 162 203 IPR001841 -
Lele10g0357 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 128 259 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele10g0357 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 262 IPR013083 -
Lele10g0357 293 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Lele10g0357 293 Coils Coil 24 44 - -
Lele10g0357 293 SMART ring_2 162 202 IPR001841 -
Lele10g0357 293 CDD RING-HC_AtRMA_like 160 204 - -
Lele10g0357 293 SUPERFAMILY RING/U-box 150 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0357 Lele-ChrLele10 2408294 2409175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0357 116 251 C3H Transcription Factor Family AT3G58030 44.526 3.79e-35 129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0357 10 2408294 2409175 Lele11g0374 11 3662128 3663483 hybridization
Lele10g0357 10 2408294 2409175 Lele12g0922 12 17051714 17052595 hybridization