Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0325 ATGAACCCGACTGGAGTTCGTCCGAGGGAGGAGGACGGTCGGACTCGGACGAGTCAACCCAGCGAACTGAAACATCGCGAGATTGGTTTGTTGTGCTTCAACCATTTTCTGCGACTTGCAGTGACTGAGGCTGTTTTATTAGGCTCCCCGTCCCAATCTAAGACAATAATAATTCATTCGAGGTTTAGGGTTTTGATCCTCCCGCCTCTCTTGATTAATTTAACCGATTTTCAATTCCCACAACCATGTCTAAGAGGTTGCTTGGAAATGTTAAGAACTCTATACAGTGATTTTGATTTCGTTGCTCTTGTTTATGAGTATTATAGTTGGCCTTGGACGGTTCTTTGCAAATTCTTTGCCCATGGAGCATGTTTGAAGGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGCTCCTCCAAACAACATATGTACGTTTTATCAGAAAGGAGTCTGTGCCTATGGTAGTCCCTGCAGATATGACCATGTCAAAACTTCCCGTGAACAGTCCTATCGTCCATCTTCTTCTGCAAATGTACACCCCCTAAATATAGTTGGTAGTACTAGAGTTACATCAAATGGGGCTGCTACAATTCCTGAGTTTTCTTCTCATAGTGGACCTTCCTTTCCTATTATTCCTGCATGGAATGGAGAATCTGAGTTTCATGTTCCTGATTGTTTTAACGCTTGGAATCCAGAATCTGGGGATCAAGATTTTTTAGAGGACAGTGATGTCAGGGAATCCAGCATTGCTGATCCTTCAGAGCGTCCTATCTGTTCATTTGCTGCTGCTGGTAATTGTCCCCGGGAGGAGAAATGCCCTTTTATTCACGGAGATTTGTGTCCTACCTGTGGAAAGCACTGCTTACATCCTTTCCGACCTGAAGAACGAGAAGAACATATGATGAATTGCCAAAAAATGCAAAAGCATCTTGAGGCATTGAAAGGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTTTCAAAACCCACAGTAGCTGAACGCAAGTTTGGGCTGCTATCTGAATGTGATCATCCCTTCTGCATATCTTGCATTAGGAATTGGCGTAGTAGTAACCCAACCTTGGGAATGGATGTGAATACCACATTGAGGGCCTGTCCAATCTGTCGTAAGCTCTCTTACTTTGTCATTCCAAGTGTCATTTGGTACTCTACAACGGAAGAAAAACAGGAAATCATCGACAGTTACAAGGAAAAGCTCAAGTCAATTGATTGCAAGCATTTTGACTTTGGGAGTGGGAACTGCCCTTTTGGTACTAGCTGTTTCTACAAGCATGCTTACCGAGATGGCAGACTTGAGCAAGTAGTTCTGAGGCATCTTGGGGCTGCAGATGGCAACACTATGATTGCTAAAGACATCAGGGTGATGCTCATACGTTCTAATGATACTTGTATAAAGATAAACGGATAA 1440 0.4319 MNPTGVRPREEDGRTRTSQPSELKHREIGLLCFNHFLRLAVTEAVLLGSPSQSKTIIIHSRFRVLILPPLLINLTDFQFPQPCLRGCLEMLRTLYSDFDFVALVYEYYSWPWTVLCKFFAHGACLKGEHCEFSHDWKAPPNNICTFYQKGVCAYGSPCRYDHVKTSREQSYRPSSSANVHPLNIVGSTRVTSNGAATIPEFSSHSGPSFPIIPAWNGESEFHVPDCFNAWNPESGDQDFLEDSDVRESSIADPSERPICSFAAAGNCPREEKCPFIHGDLCPTCGKHCLHPFRPEEREEHMMNCQKMQKHLEALKGSQEIECSVCLERVLSKPTVAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNTTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDSYKEKLKSIDCKHFDFGSGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGNTMIAKDIRVMLIRSNDTCIKING 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0325 479 SUPERFAMILY CCCH zinc finger 141 162 IPR036855 GO:0046872
Lele10g0325 479 PANTHER MAKORIN-RELATED 114 449 IPR045072 GO:0000209|GO:0061630
Lele10g0325 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 163 IPR000571 GO:0046872
Lele10g0325 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 256 278 IPR000571 GO:0046872
Lele10g0325 479 ProSiteProfiles Zinc finger C3H1-type profile. 253 280 IPR000571 GO:0046872
Lele10g0325 479 SUPERFAMILY RING/U-box 310 386 - -
Lele10g0325 479 CDD RING-HC_MKRN 322 380 - -
Lele10g0325 479 ProSiteProfiles Zinc finger C3H1-type profile. 115 137 IPR000571 GO:0046872
Lele10g0325 479 SMART ring_2 322 379 IPR001841 -
Lele10g0325 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 386 IPR013083 -
Lele10g0325 479 Pfam RNA-binding, Nab2-type zinc finger 414 436 - -
Lele10g0325 479 SMART c3hfinal6 254 279 IPR000571 GO:0046872
Lele10g0325 479 SMART c3hfinal6 139 164 IPR000571 GO:0046872
Lele10g0325 479 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Lele10g0325 479 SMART c3hfinal6 409 437 IPR000571 GO:0046872
Lele10g0325 479 MobiDBLite consensus disorder prediction 1 21 - -
Lele10g0325 479 Gene3D - 111 177 - -
Lele10g0325 479 ProSiteProfiles Zinc finger C3H1-type profile. 138 165 IPR000571 GO:0046872
Lele10g0325 479 Pfam Zinc finger, C3HC4 type (RING finger) 322 379 IPR018957 GO:0046872
Lele10g0325 479 ProSiteProfiles Zinc finger C3H1-type profile. 409 438 IPR000571 GO:0046872
Lele10g0325 479 ProSiteProfiles Zinc finger RING-type profile. 322 380 IPR001841 -
Lele10g0325 479 Pfam CCCH-type zinc finger 115 135 IPR041367 -
Lele10g0325 479 SUPERFAMILY CCCH zinc finger 113 135 IPR036855 GO:0046872
Lele10g0325 479 MobiDBLite consensus disorder prediction 7 21 - -
Lele10g0325 479 ProSitePatterns Zinc finger RING-type signature. 346 355 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0325 Lele-ChrLele10 2189401 2192979 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele10g0325 zf-C3HC4 7.2e-07 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0325 10 2189401 2192979 Lele11g0339 11 3448751 3451467 hybridization
Lele10g0325 10 2189401 2192979 Lele12g0954 12 17273929 17279276 hybridization