Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0324 ATGTCTAAGAGGATTTGTAAGTTCTATGCCCGTGGAAATTGTTTCAGAGGGGAGCAATGTGATTATTCTCATGACGAACAGGATACTCCAGTTGATATTTGCACATTCTATCAGAAAGGACACTGCTCTTATGGTAGTCAATGTAGATATAAACATGTCAAAGCTTCTCAGGCAAGTTCTGCATCATCTTCAGAAAATGGTCGGCAATCTCTGTCTTCAAAGTCTGTCATAGATCATACAACTCGAGGAAAATCAAGGTGGATCCCCAAGAATACAAAATCTGCAAGCATTGGTCATCTTAAGCATCTGAATTCTCCAAAGAATGGTGATGTTGGTGAATCTAGTTATGTTATACCTTCAAAGCGTAGCGTTTGCACATATGCTGCAGCCAACTGTCCCTTAGGAAAAAAATGCTTGCGCATTCATGGAGACCAGTGTCTGTATTGTAGAAAGTACTGCTTGCATCCTGCTGACCAAAGGGAGAGACAGAATCATTTGAATTCTTGTGACAAAAAGGAAAAGTACAATCAGGCATTAAAAGATAGTCAAGAAATAGAGTGCAATATTTGCTTGGAGCGTGTTCTTTCAAAGCCAAAAGCATCTGAGTGTAAGTTTGGGATGCTTCCTGAATGCGACCATGCTTTCTGTTTATCCTGTATCAGGAATTGGCGAAACAGTGCCTCAAACTCTGAAATGGACATCTTTAAAATTGCTAATAATAATATGGTGAGGACTTGCCCTGTGTGTCGCAAGCTATCATATTTTGTGATTCCAAGTCCTATATGGTACTTCACAAAGGAAGAAAAGCAGGAAGTTATCGATAGCTACAAGGCCAATTGCAAGTTGATTGATTGTAAGCATTTTGACTTTGGAAATGGGAACTGTCCATTTGGAGCTAGGTGTTTCTACAAGCATACTGTGAAGCCAGGCTCAGTGATGTGGAGACATGGTAGGCCACCACCTCCTCGCCGCTCCAGAGCACAAAATAATATGGATATGTATGAAATGATTGATATGCTCAGTGATTTTGATTTACAAAGTGGTGAATTCTATTCCATCATGCGGGACTCTGAGTTTTTTGAAGATATGGATCCTTACGAGATGATGGCTGTATCAGATATGCTGGCTTCTTCTGGTTCAGGACCTAGGTTTTTTGATGACGAAGATTCTGATGATGACGAAATGGGTTTTTTTGAGATGGCTGCTCTATCAGCATCGCTGGATAACCCTTTTGAGGATTTTGACAGCGATGAGTTAAATCCTTCGCAAGCAGCGTTCTTATCAATGGTAATGCAATCTAACATGGAAGATAATAGTGAAGGGGAGGAGGATGACTAG 1338 0.4058 MSKRICKFYARGNCFRGEQCDYSHDEQDTPVDICTFYQKGHCSYGSQCRYKHVKASQASSASSSENGRQSLSSKSVIDHTTRGKSRWIPKNTKSASIGHLKHLNSPKNGDVGESSYVIPSKRSVCTYAAANCPLGKKCLRIHGDQCLYCRKYCLHPADQRERQNHLNSCDKKEKYNQALKDSQEIECNICLERVLSKPKASECKFGMLPECDHAFCLSCIRNWRNSASNSEMDIFKIANNNMVRTCPVCRKLSYFVIPSPIWYFTKEEKQEVIDSYKANCKLIDCKHFDFGNGNCPFGARCFYKHTVKPGSVMWRHGRPPPPRRSRAQNNMDMYEMIDMLSDFDLQSGEFYSIMRDSEFFEDMDPYEMMAVSDMLASSGSGPRFFDDEDSDDDEMGFFEMAALSASLDNPFEDFDSDELNPSQAAFLSMVMQSNMEDNSEGEEDD 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0324 445 PANTHER MAKORIN-RELATED 1 359 IPR045072 GO:0000209|GO:0061630
Lele10g0324 445 SMART c3hfinal6 1 26 IPR000571 GO:0046872
Lele10g0324 445 SMART c3hfinal6 279 307 IPR000571 GO:0046872
Lele10g0324 445 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Lele10g0324 445 SMART c3hfinal6 121 144 IPR000571 GO:0046872
Lele10g0324 445 CDD RING-HC_MKRN 187 250 - -
Lele10g0324 445 Pfam Zinc finger, C3HC4 type (RING finger) 187 249 IPR018957 GO:0046872
Lele10g0324 445 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Lele10g0324 445 SUPERFAMILY RING/U-box 177 256 - -
Lele10g0324 445 SMART ring_2 187 249 IPR001841 -
Lele10g0324 445 ProSiteProfiles Zinc finger RING-type profile. 187 250 IPR001841 -
Lele10g0324 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 279 IPR013083 -
Lele10g0324 445 ProSiteProfiles Zinc finger C3H1-type profile. 279 308 IPR000571 GO:0046872
Lele10g0324 445 MobiDBLite consensus disorder prediction 59 91 - -
Lele10g0324 445 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Lele10g0324 445 SUPERFAMILY CCCH zinc finger 28 52 IPR036855 GO:0046872
Lele10g0324 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 53 IPR000571 GO:0046872
Lele10g0324 445 Pfam RNA-binding, Nab2-type zinc finger 284 305 - -
Lele10g0324 445 Pfam RNA-binding, Nab2-type zinc finger 125 143 - -
Lele10g0324 445 Pfam RNA-binding, Nab2-type zinc finger 5 24 - -
Lele10g0324 445 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Lele10g0324 445 Gene3D - 1 67 - -
Lele10g0324 445 MobiDBLite consensus disorder prediction 59 78 - -
Lele10g0324 445 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Lele10g0324 445 ProSiteProfiles Zinc finger C3H1-type profile. 119 145 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0324 Lele-ChrLele10 2184141 2187105 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele10g0324 zf-C3HC4 8.6e-07 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0324 10 2184141 2187105 Lele10g0324 10 2184141 2187105 ECH
Lele10g0324 10 2184141 2187105 Lele11g0338 11 3443746 3446788 hybridization
Lele10g0324 10 2184141 2187105 Lele12g0955 12 17279469 17282470 hybridization