Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0323 ATGACCGATCCTCACTCTAATTTCTTCTCAAAGTGCTTCAACTTCGTCCCTCTCCATCCCCACTTCTACTCTTCCAATTCCTACAGTAGTTTCTCCATTCAATTCCAACCTCCTCCTTCTTCCCCAAGAGAAGCCCTTCCTCTGCTGAACAATCTCAGTCTTCTCACAAGCCAGCACAACAAGCAAAGAACTCCTGATCATCATCATCAACAACCCTCAACCAATAAGGAACAACAGCCATTAATTCTTCAAGACAAAGAAGTAGCTGAGACTAGTAATGATGAAACTGTGACTGTTGCTCTACGCATAGGACTTCCCTCCATGACTGATACTAATACTACTAGCAGTAGCAGAAGTAATACTCAGATTAATTCAAACTCTTGCTCCTCCATTGAAACGACGACCATGGAGAAAGATCAAGTTGGTGGTGGTGCCGTTTCGGGACACTACTCTTTTGATCCGTTGAACAAAGGCCAGTACTGGATCCCAACTCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCCGTCTGCTCCAAAACCTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAGTACAGAAAGGGACCAGATTCCCTAAGAGGAACACAACCTACGGCAATGCTAAGGCTTCCATGTTTCTGTTGTGCACCAAACTGCAAGCACAACATAGACCATCCAAGGGCAAGGCCTTTGAAGGATTTCAGAACCCTGCAAACTCATTACAAGAGGAAGCACGGCGCCAAACCCTACATGTGCAGAAAATGCAGCAAAGCCTTCGCTGTGAAAGGTGACTGGAGGACCCACGAGAAGAACTGTGGCAAAATCTGGTATTGTCTCTGTGGTTCTGACTTCAAACACAAGAGATCTCTCAAAGACCACATTAGGGCTTTTGGCCATGGCCATGGTGGAGCTTTTCCTGCTGGCCTGAATGATAATTGCTTGCAGGAAGAAGATGAAGCAAACTCTGAGATCGAACATGACGGAGACAACTCAATGTGA 1026 0.4571 MTDPHSNFFSKCFNFVPLHPHFYSSNSYSSFSIQFQPPPSSPREALPLLNNLSLLTSQHNKQRTPDHHHQQPSTNKEQQPLILQDKEVAETSNDETVTVALRIGLPSMTDTNTTSSSRSNTQINSNSCSSIETTTMEKDQVGGGAVSGHYSFDPLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPNCKHNIDHPRARPLKDFRTLQTHYKRKHGAKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIRAFGHGHGGAFPAGLNDNCLQEEDEANSEIEHDGDNSM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0323 341 PANTHER ZINC FINGER PROTEIN WIP2 23 335 IPR043584 GO:0003700|GO:0010468
Lele10g0323 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
Lele10g0323 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 315 IPR013087 -
Lele10g0323 341 MobiDBLite consensus disorder prediction 59 79 - -
Lele10g0323 341 SUPERFAMILY beta-beta-alpha zinc fingers 168 197 IPR036236 -
Lele10g0323 341 FunFam zinc finger protein WIP2-like 174 197 - -
Lele10g0323 341 SUPERFAMILY beta-beta-alpha zinc fingers 243 279 IPR036236 -
Lele10g0323 341 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Lele10g0323 341 Pfam Zinc finger, C2H2 type 175 194 IPR013087 -
Lele10g0323 341 SMART c2h2final6 285 308 IPR013087 -
Lele10g0323 341 SMART c2h2final6 259 279 IPR013087 -
Lele10g0323 341 SMART c2h2final6 175 197 IPR013087 -
Lele10g0323 341 Gene3D Classic Zinc Finger 236 314 - -
Lele10g0323 341 FunFam Zinc finger protein WIP2 228 310 - -
Lele10g0323 341 Gene3D Classic Zinc Finger 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0323 Lele-ChrLele10 2175635 2178116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0323 1 334 C2H2 Transcription Factor Family AT3G57670 53.846 4.17e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele10g0323 zf-C2H2_6 9.1e-05 CL0361