Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0291 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATCGAGAATGCGAACAGCCGGCAAGTCACATTCTCCAAGAGGCGCAATGGATTGCTTAAGAAAGCTCAGGAACTTGCTATTCTCTGTGATGCTGAGGTTGCTGTGATCATTTTTTCTAACACAGGGAAGCTTTTCGAGTTTTCGAGTTCTGGTATGATGCGAACGCTTTCAAGATACAACAAATGCTTTAATTCTTCAGAGGCTGCTGTGGTGGAAAGTAAGACAGAGGTACTCTGTCATATATCCATTAACCATGAGCATAGTAAAATCCATAATCTTTTCTCTGGTTTAAGGCGGTTGCTGGGTAAGGACCTGACTGGTTTGAATTTAAAAGAATTGCACCAGCTTGAGCAGCAACTTAACGAAGCATTATTGTCTATCAAGGAGAAGAAGGAACAAAGGGCTATGTTGGAGAATGAAACTTTGCGTAGACAGGTCGAGGAGCTTCGCTGTTTGTTTCCGATAACCGAGCATGTGGTCCCATCTTTTCTTCAAGACCACCATGTGGAAAGAAGGGTCGCACCTGTAAATAATGGTGTCATATGTTCCAACTTGGTCAGTAACTATGAAAATGAGAATGGAGATTCAGACACTACCTTGCATTTAGGGTTGCCCACTGATGTTCATCACAAGAGGAAGGCACCTGAGAAAGAAACAATCTCCAAAGACTCTGAATCTCAAATGGCTCTTCTCTGA 726 0.427 MGRGKIEIKRIENANSRQVTFSKRRNGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMMRTLSRYNKCFNSSEAAVVESKTEVLCHISINHEHSKIHNLFSGLRRLLGKDLTGLNLKELHQLEQQLNEALLSIKEKKEQRAMLENETLRRQVEELRCLFPITEHVVPSFLQDHHVERRVAPVNNGVICSNLVSNYENENGDSDTTLHLGLPTDVHHKRKAPEKETISKDSESQMALL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0291 241 Pfam K-box region 98 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele10g0291 241 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lele10g0291 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele10g0291 241 MobiDBLite consensus disorder prediction 216 233 - -
Lele10g0291 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele10g0291 241 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Lele10g0291 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele10g0291 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele10g0291 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele10g0291 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele10g0291 241 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele10g0291 241 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lele10g0291 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Lele10g0291 241 ProSiteProfiles K-box domain profile. 86 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele10g0291 241 Coils Coil 120 162 - -
Lele10g0291 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele10g0291 241 MobiDBLite consensus disorder prediction 216 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0291 Lele-ChrLele10 1939055 1942428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0291 1 239 MADS-box Gene Family AT5G13790 47.876 4.21e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele10g0291 K-box 1.3e-11 No_clan